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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g297016v5   uncharacterized protein 
 ath-u.5   XPB2   homolog of Xeroderma pigmentosum complementation group B 2 
 ath-u.5   XPB1   DNA repair helicase XPB1-like protein 
 gma-u.5   100789550   general transcription and DNA repair factor IIH helicase subunit XPB1 
 gma-u.5   100818501   general transcription and DNA repair factor IIH helicase subunit XPB1 
 sly-u.5   101251406   general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 
 osa-u.5   4325640   general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 
 zma-u.5   103651319   uncharacterized LOC103651319 
 vvi-u.5   100250174   general transcription and DNA repair factor IIH helicase subunit XPB1 
 ppo-u.5   7472752   general transcription and DNA repair factor IIH helicase subunit XPB1 
 mtr-u.5   25502076   general transcription and DNA repair factor IIH helicase subunit XPB1 

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Top 50 coexpressed genes to CHLRE_06g297016v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g297016v5 (cre-r.1 coexpression data)

CoexMap"5716743"


creCHLRE_06g297016v5 | Entrez gene ID : 5716743    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (25 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (28 genes)  IEA  
GO CC
GO:0000112 [list] [network] nucleotide-excision repair factor 3 complex  (1 genes)  IEA  
GO:0097550 [list] [network] transcription preinitiation complex  (3 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (9 genes)  IEA  
GO MF
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (16 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0016787 [list] [network] hydrolase activity  (1498 genes)  IEA  
Protein XP_042924229.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  mito 2,  cyto_nucl 2  (predict for XP_042924229.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_042924229.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g297016v5

.
ath-u.5
for
XPB2

.
ath-u.5
for
XPB1

.
gma-u.5
for
100789550

.
gma-u.5
for
100818501

.
sly-u.5
for
101251406

.
osa-u.5
for
4325640

.
zma-u.5
for
103651319

.
vvi-u.5
for
100250174

.
ppo-u.5
for
7472752

.
mtr-u.5
for
25502076

.


Ortholog ID: 6665
Species ath ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol XPB2 XPB1 LOC100789550 LOC100818501 LOC101251406 LOC4325640 LOC103651319 LOC103864077 LOC103850219 LOC100250174 LOC7472752 LOC25502076 LOC123078927 LOC123070515 LOC123444160 LOC107924629 LOC107929280 LOC125607947 LOC106352717 CHLRE_06g297016v5 LOC8063093 LOC102589513 LOC102621673 LOC100822542 LOC107807765 LOC107817044
Function* homolog of Xeroderma pigmentosum complementation group B 2 DNA repair helicase XPB1-like protein general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 uncharacterized LOC103651319 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1-like general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1-like general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1-like general transcription and DNA repair factor IIH helicase subunit XPB1-like uncharacterized protein DNA repair helicase XPB1 DNA repair helicase XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase subunit XPB1 general transcription and DNA repair factor IIH helicase/translocase subunit XPB1-like general transcription and DNA repair factor IIH helicase/translocase subunit XPB1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath04814 Motor proteins 2
ath03420 Nucleotide excision repair 2
ath04120 Ubiquitin mediated proteolysis 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 4
gma04120 Ubiquitin mediated proteolysis 4
gma00730 Thiamine metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma03420 Nucleotide excision repair 4
gma03020 RNA polymerase 2
gma03272 Virion - Hepatitis viruses 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04146 Peroxisome 5
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03250 Viral life cycle - HIV-1 2
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 8
zma04141 Protein processing in endoplasmic reticulum 3
zma03420 Nucleotide excision repair 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 5
ppo03013 Nucleocytoplasmic transport 2
ppo01200 Carbon metabolism 2
ppo03018 RNA degradation 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03022 Basal transcription factors 3
mtr03420 Nucleotide excision repair 3
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 7
ghi04120 Ubiquitin mediated proteolysis 4
ghi00460 Cyanoamino acid metabolism 3
ghi00500 Starch and sucrose metabolism 3
ghi00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 7
bna04120 Ubiquitin mediated proteolysis 7
bna03022 Basal transcription factors 3
bna04141 Protein processing in endoplasmic reticulum 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 9
bna04120 Ubiquitin mediated proteolysis 4
bna03022 Basal transcription factors 3
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi00240 Pyrimidine metabolism 2
sbi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03420 Nucleotide excision repair 2
cit03018 RNA degradation 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
bdi04146 Peroxisome 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 8
nta03022 Basal transcription factors 5
nta03420 Nucleotide excision repair 5
nta00220 Arginine biosynthesis 4
nta00250 Alanine, aspartate and glutamate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 5
nta03420 Nucleotide excision repair 5
nta01200 Carbon metabolism 4
nta04146 Peroxisome 4
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834138 834139 100789550 100818501 101251406 4325640 103651319 103864077 103850219 100250174 7472752 25502076 123078927 123070515 123444160 107924629 107929280 125607947 106352717 5716743 8063093 102589513 102621673 100822542 107807765 107817044
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