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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g309300v5   uncharacterized protein 
 ath-u.5   PFC1   Ribosomal RNA adenine dimethylase family protein 
 gma-u.5   100790726   ribosomal RNA small subunit methyltransferase, chloroplastic 
 gma-u.5   100780381   ribosomal RNA small subunit methyltransferase, chloroplastic 
 sly-u.5   101258502   ribosomal RNA small subunit methyltransferase, chloroplastic 
 osa-u.5   9271200   ribosomal RNA small subunit methyltransferase, chloroplastic 
 zma-u.5   100285018   uncharacterized LOC100285018 
 vvi-u.5   100264412   ribosomal RNA small subunit methyltransferase, chloroplastic 
 ppo-u.5   7464904   ribosomal RNA small subunit methyltransferase, chloroplastic 
 mtr-u.5   11432602   ribosomal RNA small subunit methyltransferase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_06g309300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g309300v5 (cre-r.1 coexpression data)

CoexMap"5716827"


creCHLRE_06g309300v5 | Entrez gene ID : 5716827    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031167 [list] [network] rRNA methylation  (22 genes)  IEA  
GO CC
GO:0005759 [list] [network] mitochondrial matrix  (126 genes)  IEA  
GO MF
GO:0000179 [list] [network] rRNA (adenine-N6,N6-)-dimethyltransferase activity  (2 genes)  IEA  
Protein XP_042924467.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_042924467.1)
Subcellular
localization
TargetP
chlo 6,  mito 5  (predict for XP_042924467.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g309300v5

.
ath-u.5
for
PFC1

.
gma-u.5
for
100790726

.
gma-u.5
for
100780381

.
sly-u.5
for
101258502

.
osa-u.5
for
9271200

.
zma-u.5
for
100285018

.
vvi-u.5
for
100264412

.
ppo-u.5
for
7464904

.
mtr-u.5
for
11432602

.


Ortholog ID: 10480
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PFC1 LOC100780381 LOC100790726 LOC101258502 LOC9271200 LOC100285018 LOC103843813 LOC100264412 LOC7464904 LOC11432602 LOC123135839 LOC123143364 LOC123401918 LOC107911943 LOC107960552 LOC106434179 LOC106426082 CHLRE_06g309300v5 LOC8068269 LOC102595371 LOC102623217 LOC100842973 LOC107801651 LOC107796843
Function* Ribosomal RNA adenine dimethylase family protein ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic uncharacterized LOC100285018 ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic-like uncharacterized protein ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic-like ribosomal RNA small subunit methyltransferase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839283 100780381 100790726 101258502 9271200 100285018 103843813 100264412 7464904 11432602 123135839 123143364 123401918 107911943 107960552 106434179 106426082 5716827 8068269 102595371 102623217 100842973 107801651 107796843
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