ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g307800v5	uncharacterized protein
cre-r.1	CHLRE_13g603950v5	uncharacterized protein
ath-u.5	AT4G17070	peptidyl-prolyl cis-trans isomerase
gma-u.5	CYP32	peptidyl-prolyl cis-trans isomerase CYP32
gma-u.5	CYP30	peptidyl-prolyl cis-trans isomerase CYP30
sly-u.5	101250144	uncharacterized LOC101250144
osa-u.5	4331278	uncharacterized LOC4331278
zma-u.5	100276268	peptidyl-prolyl cis-trans isomerases
bra-r.6	103868909	uncharacterized LOC103868909
vvi-u.5	100241055	uncharacterized LOC100241055
vvi-u.5	100854739	uncharacterized LOC100854739
ppo-u.5	18105094	uncharacterized LOC18105094
ppo-u.5	18096898	uncharacterized LOC18096898
ppo-u.5	18096759	uncharacterized LOC18096759
mtr-u.5	11437459	uncharacterized LOC11437459
mtr-u.5	11433954	uncharacterized LOC11433954
tae-r.2	123093981	uncharacterized LOC123093981
tae-r.2	123106140	uncharacterized LOC123106140
tae-r.2	123099176	uncharacterized LOC123099176
hvu-r.1	123450942	uncharacterized LOC123450942
ghi-r.1	107896531	uncharacterized LOC107896531
ghi-r.1	107911858	uncharacterized LOC107911858
ghi-r.1	107919893	uncharacterized LOC107919893
bna-r.1	106437384	uncharacterized LOC106437384
bna-r.1	BNAA08G08200D	uncharacterized BNAA08G08200D
bna-r.1	111208826	uncharacterized LOC111208826
sot-r.1	102589708	uncharacterized LOC102589708
cit-r.1	102621214	uncharacterized LOC102621214
cit-r.1	102623933	hypothetical protein
bdi-r.1	100821550	uncharacterized LOC100821550
nta-r.1	107777170	uncharacterized LOC107777170
nta-r.1	107773381	uncharacterized LOC107773381

Top 50 coexpressed genes to CHLRE_06g307800v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g307800v5 (cre-r.1 coexpression data)

CoexMap"5716851"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_001691366.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 5, chlo 1, golg 1, nucl 1, mito 1, extr 1, golg_plas 1

(predict for XP_001691366.1)

Subcellular
localization
TargetP

scret 8

(predict for XP_001691366.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g307800v5	cre-r.1 for CHLRE_13g603950v5	ath-u.5 for AT4G17070	gma-u.5 for CYP32	gma-u.5 for CYP30	sly-u.5 for 101250144	osa-u.5 for 4331278	zma-u.5 for 100276268	bra-r.6 for 103868909	vvi-u.5 for 100241055	vvi-u.5 for 100854739	ppo-u.5 for 18105094	ppo-u.5 for 18096898	ppo-u.5 for 18096759	mtr-u.5 for 11437459	mtr-u.5 for 11433954	tae-r.2 for 123093981	tae-r.2 for 123106140	tae-r.2 for 123099176	hvu-r.1 for 123450942	ghi-r.1 for 107896531	ghi-r.1 for 107911858	ghi-r.1 for 107919893	bna-r.1 for 106437384	bna-r.1 for BNAA08G08200D	bna-r.1 for 111208826	sot-r.1 for 102589708	cit-r.1 for 102621214	cit-r.1 for 102623933	bdi-r.1 for 100821550	nta-r.1 for 107777170	nta-r.1 for 107773381

Ortholog

Ortholog ID: 4592

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sot

cit

bdi

nta

Symbol

CHLRE_06g307800v5

CHLRE_13g603950v5

AT4G17070

CYP32

CYP30

CYP29

Function^*

uncharacterized protein

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP32

peptidyl-prolyl cis-trans isomerase CYP30

peptidyl-prolyl cis-trans isomerase CYP29

uncharacterized LOC101250144

uncharacterized LOC4331278

peptidyl-prolyl cis-trans isomerases

uncharacterized LOC103868909

uncharacterized LOC100241055

uncharacterized LOC100854739

uncharacterized LOC18105094

uncharacterized LOC18096898

uncharacterized LOC18096759

uncharacterized LOC11437459

uncharacterized LOC11433954

uncharacterized LOC123093981

uncharacterized LOC123106140

uncharacterized LOC123099176

uncharacterized LOC123450942

uncharacterized LOC107911858

uncharacterized LOC107919893

uncharacterized LOC107886413

uncharacterized LOC106437384

uncharacterized BNAA08G08200D

uncharacterized LOC111208826

uncharacterized LOC102589708

uncharacterized LOC102621214

hypothetical protein

uncharacterized LOC100821550

uncharacterized LOC107777170

uncharacterized LOC107773381

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	3
cre00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	6
ath00020	Citrate cycle (TCA cycle)	4
ath01210	2-Oxocarboxylic acid metabolism	4
ath04144	Endocytosis	3
ath00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	7
gma00513	Various types of N-glycan biosynthesis	7
gma04141	Protein processing in endoplasmic reticulum	7
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly00510	N-Glycan biosynthesis	2
sly00513	Various types of N-glycan biosynthesis	2
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma03018	RNA degradation	3
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2
vvi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	4
vvi00510	N-Glycan biosynthesis	2
vvi00513	Various types of N-glycan biosynthesis	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04626	Plant-pathogen interaction	4
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04626	Plant-pathogen interaction	5
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00230	Purine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr00330	Arginine and proline metabolism	2
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	2
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	2
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	4
sot00510	N-Glycan biosynthesis	4
sot00513	Various types of N-glycan biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	3
cit00190	Oxidative phosphorylation	2
cit00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04130	SNARE interactions in vesicular transport	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	3
nta00310	Lysine degradation	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	4
nta04082	Neuroactive ligand signaling	2
nta00310	Lysine degradation	2
nta04146	Peroxisome	2
nta00270	Cysteine and methionine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

5716851

5724673

827415

100820360

100811921

100808052

101250144

4331278

100276268

103868909

100241055

100854739

18105094

18096898

18096759

11437459

11433954

123093981

123106140

123099176

123450942

107911858

107919893

107886413

106437384

106360700

111208826

102589708

102621214

102623933

100821550

107777170

107773381

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sot	cit	bdi	nta	sbi
Paralog	2	1	2	1	1	1	1	2	3	2	3	1	3	3	1	2	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g307800v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g307800v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**