ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_17g709350v5	uncharacterized protein
ath-u.5	SYP51	syntaxin of plants 51
gma-u.5	100794038	syntaxin-52
gma-u.5	100799465	syntaxin-51
gma-u.5	100782666	syntaxin-51
sly-u.5	101252340	syntaxin-51
sly-u.5	101262735	syntaxin-51
osa-u.5	4345157	syntaxin-52
osa-u.5	4328103	syntaxin-52
zma-u.5	100217094	SNARE domain containing protein
zma-u.5	100193337	Syntaxin-51
bra-r.6	103832523	syntaxin-52
bra-r.6	103842859	syntaxin-51
bra-r.6	103853203	syntaxin-52
vvi-u.5	100250369	syntaxin-51
ppo-u.5	7479643	syntaxin-52
ppo-u.5	18099798	syntaxin-52
ppo-u.5	18106091	syntaxin-52
mtr-u.5	11433054	syntaxin-51
mtr-u.5	11445318	syntaxin-52
mtr-u.5	25500903	syntaxin-52
tae-r.2	123102345	syntaxin-51
tae-r.2	123131840	syntaxin-51
tae-r.2	123110518	syntaxin-51
hvu-r.1	123396140	syntaxin-51-like
hvu-r.1	123402676	syntaxin-51-like
ghi-r.1	107917855	syntaxin-51
ghi-r.1	107920418	syntaxin-51
bna-r.1	106381501	syntaxin-52
bna-r.1	106396692	syntaxin-51
bna-r.1	106414811	syntaxin-51
sbi-r.1	110436404	syntaxin-52-like
sot-r.1	102597197	syntaxin-51-like
sot-r.1	102591530	syntaxin-52-like
sot-r.1	102583014	syntaxin-51-like
cit-r.1	102608030	syntaxin-51
bdi-r.1	100840335	syntaxin-52
bdi-r.1	100825424	syntaxin-52
nta-r.1	107800731	syntaxin-52
nta-r.1	107807990	syntaxin-51-like
nta-r.1	107807999	syntaxin-52

Top 50 coexpressed genes to CHLRE_17g709350v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_17g709350v5 (cre-r.1 coexpression data)

CoexMap"5717157"

[Cytoscape]

Annotation

functional annotation

KEGG

cre04130 [list] [network] SNARE interactions in vesicular transport (17 genes)

GO BP

GO:0048278 [list] [network] vesicle docking	(17 genes)	IEA
GO:0006906 [list] [network] vesicle fusion	(22 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(159 genes)	IEA

GO CC

GO:0031201 [list] [network] SNARE complex	(20 genes)	IEA
GO:0012505 [list] [network] endomembrane system	(737 genes)	IEA
GO:0016020 [list] [network] membrane	(1543 genes)	IEA

GO MF

GO:0005484 [list] [network] SNAP receptor activity	(19 genes)	IEA
GO:0000149 [list] [network] SNARE binding	(30 genes)	IEA

Protein

XP_001691539.1 [sequence] [blastp]

Subcellular
localization
wolf

golg 3, chlo 2, nucl 2, cyto 1, mito 1, plas 1, pero 1, cyto_pero 1, mito_plas 1, cyto_plas 1

(predict for XP_001691539.1)

Subcellular
localization
TargetP

other 9

(predict for XP_001691539.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g709350v5	ath-u.5 for SYP51	gma-u.5 for 100794038	gma-u.5 for 100799465	gma-u.5 for 100782666	sly-u.5 for 101252340	sly-u.5 for 101262735	osa-u.5 for 4345157	osa-u.5 for 4328103	zma-u.5 for 100217094	zma-u.5 for 100193337	bra-r.6 for 103832523	bra-r.6 for 103842859	bra-r.6 for 103853203	vvi-u.5 for 100250369	ppo-u.5 for 7479643	ppo-u.5 for 18099798	ppo-u.5 for 18106091	mtr-u.5 for 11433054	mtr-u.5 for 11445318	mtr-u.5 for 25500903	tae-r.2 for 123102345	tae-r.2 for 123131840	tae-r.2 for 123110518	hvu-r.1 for 123396140	hvu-r.1 for 123402676	ghi-r.1 for 107917855	ghi-r.1 for 107920418	bna-r.1 for 106381501	bna-r.1 for 106396692	bna-r.1 for 106414811	sbi-r.1 for 110436404	sot-r.1 for 102597197	sot-r.1 for 102591530	sot-r.1 for 102583014	cit-r.1 for 102608030	bdi-r.1 for 100840335	bdi-r.1 for 100825424	nta-r.1 for 107800731	nta-r.1 for 107807990	nta-r.1 for 107807999

Ortholog

Ortholog ID: 1997

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

SYP52

Function^*

uncharacterized protein

syntaxin of plants 52

syntaxin-52

syntaxin-51

syntaxin-52

SNARE domain containing protein

Syntaxin-51

syntaxin-51

syntaxin-52

syntaxin-51

syntaxin-52

syntaxin-51

syntaxin-52

syntaxin-51

syntaxin-51-like

syntaxin-51

syntaxin-52

syntaxin-51

syntaxin-52-like

syntaxin-51-like

syntaxin-52-like

syntaxin-51-like

syntaxin-51

syntaxin-52

syntaxin-51

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	8
cre03272	Virion - Hepatitis viruses	4
cre03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	4
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	4
gma03040	Spliceosome	2
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4
gma04130	SNARE interactions in vesicular transport	3
gma04120	Ubiquitin mediated proteolysis	2
gma04144	Endocytosis	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma04141	Protein processing in endoplasmic reticulum	3
gma04130	SNARE interactions in vesicular transport	3
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	4
sly04141	Protein processing in endoplasmic reticulum	3
sly04130	SNARE interactions in vesicular transport	2
sly03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	3
osa04120	Ubiquitin mediated proteolysis	3
osa04141	Protein processing in endoplasmic reticulum	3
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3
osa04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	7
zma04130	SNARE interactions in vesicular transport	5
zma03250	Viral life cycle - HIV-1	3
zma04145	Phagosome	2
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	5
zma04130	SNARE interactions in vesicular transport	4
zma04145	Phagosome	2
zma04148	Efferocytosis	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04130	SNARE interactions in vesicular transport	3
bra03022	Basal transcription factors	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	3
vvi04142	Lysosome	2
vvi04145	Phagosome	2
vvi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	3
mtr03040	Spliceosome	2
mtr04144	Endocytosis	2
mtr04145	Phagosome	2
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	6
tae04130	SNARE interactions in vesicular transport	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu00071	Fatty acid degradation	2
hvu00280	Valine, leucine and isoleucine degradation	2
hvu00310	Lysine degradation	2
hvu00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	6
ghi04144	Endocytosis	4
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	6
ghi04144	Endocytosis	4
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	6
ghi04144	Endocytosis	4
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	8
bna00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	3
sbi03272	Virion - Hepatitis viruses	2
sbi04144	Endocytosis	2
sbi03013	Nucleocytoplasmic transport	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	4
sot04145	Phagosome	2
sot04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04130	SNARE interactions in vesicular transport	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	3
cit03010	Ribosome	2
cit00230	Purine metabolism	2
cit01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4
nta04144	Endocytosis	3
nta03083	Polycomb repressive complex	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	5
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta04130	SNARE interactions in vesicular transport	2

Expression

Expression pattern

Entrez Gene ID^*

5717157

844297

100794038

100799465

100782666

101252340

101262735

4345157

4328103

100217094

100193337

103842859

103853203

100250369

7479643

18099798

18106091

11433054

11445318

25500903

123110518

123172960

123135773

123396140

123402676

107917855

107920418

107926302

106396692

106429697

106346787

110436404

102597197

102591530

102583014

102608030

100840335

100825424

107800731

107764409

107819861

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	3	2	2	2	3	1	3	3	3	2	2	3	1	3	1	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g709350v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g709350v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**