ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_17g708350v5	uncharacterized protein
ath-u.5	PMP	putative type 1 membrane protein
gma-u.5	100817223	uncharacterized LOC100817223
gma-u.5	100813012	uncharacterized LOC100813012
sly-u.5	101262457	uncharacterized LOC101262457
osa-u.5	4346361	uncharacterized LOC4346361
zma-u.5	100276220	uncharacterized LOC100276220
bra-r.6	103860018	uncharacterized LOC103860018
bra-r.6	103832014	uncharacterized LOC103832014
bra-r.6	103828678	uncharacterized LOC103828678
vvi-u.5	100245241	uncharacterized LOC100245241
ppo-u.5	7493205	uncharacterized LOC7493205
ppo-u.5	7460513	uncharacterized LOC7460513
mtr-u.5	11412446	uncharacterized LOC11412446
tae-r.2	123159477	uncharacterized LOC123159477
tae-r.2	123154156	uncharacterized LOC123154156
tae-r.2	123148616	uncharacterized LOC123148616
hvu-r.1	123408760	uncharacterized LOC123408760
hvu-r.1	123413111	uncharacterized LOC123413111
ghi-r.1	107957088	uncharacterized LOC107957088
ghi-r.1	107954434	uncharacterized LOC107954434
ghi-r.1	107948541	uncharacterized LOC107948541
bna-r.1	BNAC07G07460D	uncharacterized BNAC07G07460D
bna-r.1	106389673	uncharacterized LOC106389673
bna-r.1	106415856	uncharacterized LOC106415856
sbi-r.1	110437066	uncharacterized LOC110437066
sot-r.1	102587863	uncharacterized LOC102587863
cit-r.1	102613537	uncharacterized LOC102613537
bdi-r.1	100844592	uncharacterized LOC100844592
nta-r.1	107777163	uncharacterized LOC107777163
nta-r.1	107777102	uncharacterized LOC107777102

Top 50 coexpressed genes to CHLRE_17g708350v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_17g708350v5 (cre-r.1 coexpression data)

CoexMap"5717174"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0012505 [list] [network] endomembrane system

(737 genes)

IEA

GO MF

Protein

XP_001691696.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, plas 2, E.R. 2, E.R._plas 2

(predict for XP_001691696.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_001691696.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g708350v5	ath-u.5 for PMP	gma-u.5 for 100817223	gma-u.5 for 100813012	sly-u.5 for 101262457	osa-u.5 for 4346361	zma-u.5 for 100276220	bra-r.6 for 103860018	bra-r.6 for 103832014	bra-r.6 for 103828678	vvi-u.5 for 100245241	ppo-u.5 for 7493205	ppo-u.5 for 7460513	mtr-u.5 for 11412446	tae-r.2 for 123159477	tae-r.2 for 123154156	tae-r.2 for 123148616	hvu-r.1 for 123408760	hvu-r.1 for 123413111	ghi-r.1 for 107957088	ghi-r.1 for 107954434	ghi-r.1 for 107948541	bna-r.1 for BNAC07G07460D	bna-r.1 for 106389673	bna-r.1 for 106415856	sbi-r.1 for 110437066	sot-r.1 for 102587863	cit-r.1 for 102613537	bdi-r.1 for 100844592	nta-r.1 for 107777163	nta-r.1 for 107777102

Ortholog

Ortholog ID: 4390

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

PMP

Function^*

uncharacterized protein

putative type 1 membrane protein

uncharacterized LOC100817223

uncharacterized LOC100813012

uncharacterized LOC101262457

uncharacterized LOC4346361

uncharacterized LOC100276220

uncharacterized LOC103860018

uncharacterized LOC103832014

uncharacterized LOC103828678

uncharacterized LOC100245241

uncharacterized LOC7493205

uncharacterized LOC7460513

uncharacterized LOC11412446

uncharacterized LOC123148616

uncharacterized LOC123164192

uncharacterized LOC123156809

uncharacterized LOC123408760

uncharacterized LOC123413111

uncharacterized LOC107957088

uncharacterized LOC107954434

uncharacterized LOC121206276

uncharacterized BNAC07G07460D

uncharacterized LOC106428254

uncharacterized LOC106434079

uncharacterized LOC110437066

uncharacterized LOC102587863

uncharacterized LOC102613537

uncharacterized LOC100844592

uncharacterized LOC107777163

uncharacterized LOC107777102

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04145	Phagosome	9
cre00190	Oxidative phosphorylation	8
cre04142	Lysosome	5
cre04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	12
ath04145	Phagosome	11
ath04142	Lysosome	7
ath04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	9
gma04145	Phagosome	9
gma04142	Lysosome	4
gma04144	Endocytosis	3
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	9
gma04145	Phagosome	9
gma04142	Lysosome	6
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	8
sly04145	Phagosome	5
sly04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	16
osa04145	Phagosome	14
osa04142	Lysosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	15
zma04145	Phagosome	15
zma04142	Lysosome	8
zma00040	Pentose and glucuronate interconversions	2
zma00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4
bra04145	Phagosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	5
bra04145	Phagosome	5
bra04142	Lysosome	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	11
bra04145	Phagosome	11
bra04142	Lysosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	3
vvi04145	Phagosome	3
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	3
ppo04142	Lysosome	3
ppo04145	Phagosome	3
ppo01200	Carbon metabolism	3
ppo01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04145	Phagosome	13
mtr00190	Oxidative phosphorylation	11
mtr04142	Lysosome	6
mtr04144	Endocytosis	2
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04145	Phagosome	5
tae00190	Oxidative phosphorylation	4
tae04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	4
tae04145	Phagosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	2
tae04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	7
hvu04145	Phagosome	4
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	11
hvu04145	Phagosome	10
hvu04142	Lysosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2
ghi04142	Lysosome	2
ghi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	3
bna04145	Phagosome	3
bna04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	16
sbi04145	Phagosome	15
sbi04142	Lysosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	5
sot04145	Phagosome	4
sot04142	Lysosome	4
sot00520	Amino sugar and nucleotide sugar metabolism	3
sot01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04145	Phagosome	3
cit03050	Proteasome	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	3
bdi04145	Phagosome	3
bdi04142	Lysosome	2
bdi01200	Carbon metabolism	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	5
nta04141	Protein processing in endoplasmic reticulum	2
nta04145	Phagosome	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	5
nta04141	Protein processing in endoplasmic reticulum	2
nta04145	Phagosome	2
nta04142	Lysosome	2
nta04148	Efferocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

5717174

822002

100817223

100813012

101262457

4346361

100276220

103860018

103832014

103828678

100245241

7493205

7460513

11412446

123148616

123164192

123156809

123408760

123413111

107957088

107954434

121206276

106410848

106428254

106434079

110437066

102587863

102613537

100844592

107777163

107777102

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Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	3	1	2	1	3	2	3	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g708350v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g708350v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**