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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g682350v5   uncharacterized protein 
 ath-u.5   ARI7   IBR domain-containing protein 
 ath-u.5   ARI8   IBR domain-containing protein 
 ath-u.5   ARI5   RING/U-box superfamily protein 
 gma-u.5   ARI3   putative E3 ubiquitin-protein ligase ARI3 
 gma-u.5   ARI2   putative E3 ubiquitin-protein ligase ARI2 
 gma-u.5   100810427   probable E3 ubiquitin-protein ligase ARI7 
 sly-u.5   101262146   probable E3 ubiquitin-protein ligase ARI7 
 sly-u.5   101250704   probable E3 ubiquitin-protein ligase ARI7 
 sly-u.5   101248534   probable E3 ubiquitin-protein ligase ARI8 
 osa-u.5   4347561   probable E3 ubiquitin-protein ligase ARI8 
 osa-u.5   4346186   probable E3 ubiquitin-protein ligase ARI8 
 zma-u.5   100273409   uncharacterized LOC100273409 
 zma-u.5   103654420   probable E3 ubiquitin-protein ligase ARI8 
 zma-u.5   103648198   uncharacterized LOC103648198 
 bra-r.6   103836505   probable E3 ubiquitin-protein ligase ARI5 
 bra-r.6   103844084   probable E3 ubiquitin-protein ligase ARI5 
 vvi-u.5   100257000   probable E3 ubiquitin-protein ligase ARI8 
 vvi-u.5   100262873   probable E3 ubiquitin-protein ligase ARI7 
 ppo-u.5   7472462   probable E3 ubiquitin-protein ligase ARI8 
 ppo-u.5   7464600   probable E3 ubiquitin-protein ligase ARI8 
 ppo-u.5   7491767   probable E3 ubiquitin-protein ligase ARI7 
 mtr-u.5   11426565   probable E3 ubiquitin-protein ligase ARI7 
 mtr-u.5   11411243   probable E3 ubiquitin-protein ligase ARI8 
 mtr-u.5   25492643   probable E3 ubiquitin-protein ligase ARI7 
 tae-r.2   123045872   probable E3 ubiquitin-protein ligase ARI8 
 tae-r.2   123137406   probable E3 ubiquitin-protein ligase ARI8 
 hvu-r.1   123399878   probable E3 ubiquitin-protein ligase ARI5 
 hvu-r.1   123404046   probable E3 ubiquitin-protein ligase ARI8 
 ghi-r.1   107890529   probable E3 ubiquitin-protein ligase ARI7 
 ghi-r.1   107920360   probable E3 ubiquitin-protein ligase ARI8 
 ghi-r.1   121206293   probable E3 ubiquitin-protein ligase ARI7 
 bna-r.1   106445697   probable E3 ubiquitin-protein ligase ARI7 
 bna-r.1   111198199   probable E3 ubiquitin-protein ligase ARI7 
 bna-r.1   106371156   probable E3 ubiquitin-protein ligase ARI12 
 sbi-r.1   8060910   probable E3 ubiquitin-protein ligase ARI8 
 sbi-r.1   8070213   uncharacterized LOC8070213 
 sot-r.1   102579650   probable E3 ubiquitin-protein ligase ARI8 
 sot-r.1   102591171   probable E3 ubiquitin-protein ligase ARI7 
 sot-r.1   102595867   probable E3 ubiquitin-protein ligase ARI7 
 cit-r.1   102630454   probable E3 ubiquitin-protein ligase ARI8 
 cit-r.1   102619087   probable E3 ubiquitin-protein ligase ARI7 
 bdi-r.1   100823610   probable E3 ubiquitin-protein ligase ARI7 
 bdi-r.1   100828310   probable E3 ubiquitin-protein ligase ARI8 
 nta-r.1   107780529   putative E3 ubiquitin-protein ligase ARI7 
 nta-r.1   107759684   putative E3 ubiquitin-protein ligase ARI8 
 nta-r.1   107806892   putative E3 ubiquitin-protein ligase ARI8 

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Top 50 coexpressed genes to CHLRE_16g682350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g682350v5 (cre-r.1 coexpression data)

CoexMap"5717571"


creCHLRE_16g682350v5 | Entrez gene ID : 5717571      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 3 3 3 2 3 2 2 3 3 2 2 3 3 2 3 2 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (14 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (40 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (159 genes)  IEA  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (145 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (9 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (65 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
Protein XP_042915989.1 [sequence] [blastp]
XP_042915990.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_042915989.1)
nucl 7,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_042915990.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042915989.1)
other 9  (predict for XP_042915990.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g682350v5
ath-u.5
for
ARI7
ath-u.5
for
ARI8
ath-u.5
for
ARI5
gma-u.5
for
ARI3
gma-u.5
for
ARI2
gma-u.5
for
100810427
sly-u.5
for
101262146
sly-u.5
for
101250704
sly-u.5
for
101248534
osa-u.5
for
4347561
osa-u.5
for
4346186
zma-u.5
for
100273409
zma-u.5
for
103654420
zma-u.5
for
103648198
bra-r.6
for
103836505
bra-r.6
for
103844084
vvi-u.5
for
100257000
vvi-u.5
for
100262873
ppo-u.5
for
7472462
ppo-u.5
for
7464600
ppo-u.5
for
7491767
mtr-u.5
for
11426565
mtr-u.5
for
11411243
mtr-u.5
for
25492643
tae-r.2
for
123045872
tae-r.2
for
123137406
hvu-r.1
for
123399878
hvu-r.1
for
123404046
ghi-r.1
for
107890529
ghi-r.1
for
107920360
ghi-r.1
for
121206293
bna-r.1
for
106445697
bna-r.1
for
111198199
bna-r.1
for
106371156
sbi-r.1
for
8060910
sbi-r.1
for
8070213
sot-r.1
for
102579650
sot-r.1
for
102591171
sot-r.1
for
102595867
cit-r.1
for
102630454
cit-r.1
for
102619087
bdi-r.1
for
100823610
bdi-r.1
for
100828310
nta-r.1
for
107780529
nta-r.1
for
107759684
nta-r.1
for
107806892


Ortholog ID: 744
Species cre ath gma gma gma sly sly sly osa osa osa zma zma zma bra bra vvi vvi ppo ppo ppo mtr mtr mtr tae tae hvu hvu hvu ghi ghi ghi bna bna sbi sot sot sot cit cit bdi bdi nta nta nta
Symbol CHLRE_16g682350v5 ARI7 ARI2 LOC100810427 ARI1 LOC101262146 LOC101250704 LOC101248534 LOC4347561 LOC4346186 LOC4336253 LOC100273409 LOC103654420 LOC103645186 LOC103836505 LOC103865131 LOC100257000 LOC100262873 LOC7472462 LOC7464600 LOC18106936 LOC11426565 LOC11411243 LOC25492643 LOC123156284 LOC123144752 LOC123404046 LOC123407387 LOC123427099 LOC121206293 LOC107893787 LOC121223508 LOC106397455 LOC106400817 LOC8060188 LOC102579650 LOC102591171 LOC102595867 LOC102630454 LOC102619087 LOC100823610 LOC100839541 LOC107759684 LOC107798305 LOC107776395
Function* uncharacterized protein IBR domain-containing protein putative E3 ubiquitin-protein ligase ARI2 probable E3 ubiquitin-protein ligase ARI7 putative E3 ubiquitin-protein ligase ARI1 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 uncharacterized LOC100273409 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI5 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI12 probable E3 ubiquitin-protein ligase ARI5 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI8 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI7 probable E3 ubiquitin-protein ligase ARI8 putative E3 ubiquitin-protein ligase ARI8 putative E3 ubiquitin-protein ligase ARI7 putative E3 ubiquitin-protein ligase ARI8
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03250 Viral life cycle - HIV-1 2
cre03272 Virion - Hepatitis viruses 2
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 9
ghi00260 Glycine, serine and threonine metabolism 6
ghi00010 Glycolysis / Gluconeogenesis 6
ghi01200 Carbon metabolism 6
ghi00261 Monobactam biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 3
bna04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot03082 ATP-dependent chromatin remodeling 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03040 Spliceosome 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5717571 817709 100795162 100810427 100784195 101262146 101250704 101248534 4347561 4346186 4336253 100273409 103654420 103645186 103836505 103865131 100257000 100262873 7472462 7464600 18106936 11426565 11411243 25492643 123156284 123144752 123404046 123407387 123427099 121206293 107893787 121223508 106397455 106400817 8060188 102579650 102591171 102595867 102630454 102619087 100823610 100839541 107759684 107798305 107776395
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