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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g682900v5   uncharacterized protein 
 ath-u.5   CLP2   CLP protease proteolytic subunit 2 
 gma-u.5   100800113   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 gma-u.5   100793679   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 sly-u.5   101261350   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 osa-u.5   4340044   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 zma-u.5   100125655   uncharacterized LOC100125655 
 bra-r.6   103872006   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bra-r.6   103843128   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 vvi-u.5   100256891   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 ppo-u.5   18094418   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 mtr-u.5   11407134   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 tae-r.2   123167378   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 tae-r.2   123150475   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 tae-r.2   123087871   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 hvu-r.1   123408852   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 ghi-r.1   107936380   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 ghi-r.1   107941637   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 ghi-r.1   107946968   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bna-r.1   106416284   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bna-r.1   111206485   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bna-r.1   106402160   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 sbi-r.1   110431214   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 sot-r.1   102604367   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 cit-r.1   102612769   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bdi-r.1   100834344   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 nta-r.1   107782632   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 nta-r.1   107774235   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 

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Top 50 coexpressed genes to CHLRE_16g682900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g682900v5 (cre-r.1 coexpression data)

CoexMap"5717588"


creCHLRE_16g682900v5 | Entrez gene ID : 5717588      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 2 1 1 1 3 1 3 3 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006515 [list] [network] protein quality control for misfolded or incompletely synthesized proteins  (10 genes)  IEA  
GO CC
GO:0009368 [list] [network] endopeptidase Clp complex  (8 genes)  IEA  
GO MF
GO:0051117 [list] [network] ATPase binding  (11 genes)  IEA  
GO:0004176 [list] [network] ATP-dependent peptidase activity  (22 genes)  IEA  
GO:0004252 [list] [network] serine-type endopeptidase activity  (85 genes)  IEA  
Protein XP_001691910.1 [sequence] [blastp]
XP_042915977.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_001691910.1)
chlo 9,  chlo_mito 5  (predict for XP_042915977.1)
Subcellular
localization
TargetP
chlo 4,  mito 3  (predict for XP_001691910.1)
chlo 7,  other 3  (predict for XP_042915977.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g682900v5
ath-u.5
for
CLP2
gma-u.5
for
100800113
gma-u.5
for
100793679
sly-u.5
for
101261350
osa-u.5
for
4340044
zma-u.5
for
100125655
bra-r.6
for
103872006
bra-r.6
for
103843128
vvi-u.5
for
100256891
ppo-u.5
for
18094418
mtr-u.5
for
11407134
tae-r.2
for
123167378
tae-r.2
for
123150475
tae-r.2
for
123087871
hvu-r.1
for
123408852
ghi-r.1
for
107936380
ghi-r.1
for
107941637
ghi-r.1
for
107946968
bna-r.1
for
106416284
bna-r.1
for
111206485
bna-r.1
for
106402160
sbi-r.1
for
110431214
sot-r.1
for
102604367
cit-r.1
for
102612769
bdi-r.1
for
100834344
nta-r.1
for
107782632
nta-r.1
for
107774235


Ortholog ID: 7795
Species cre ath gma gma sly osa zma bra bra vvi ppo mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_16g682900v5 CLP2 LOC100800113 LOC100793679 LOC101261350 LOC4340044 LOC100125655 LOC103872006 LOC103843128 LOC100256891 LOC18094418 LOC11407134 LOC123167378 LOC123150475 LOC123087871 LOC123408852 LOC107936380 LOC107941637 LOC107946968 LOC111206485 LOC106402160 LOC106445582 LOC110431214 LOC102604367 LOC102612769 LOC100834344 LOC107782632 LOC107774235
Function* uncharacterized protein CLP protease proteolytic subunit 2 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic uncharacterized LOC100125655 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 3
cre01230 Biosynthesis of amino acids 3
cre01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 2
ath00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
gma00860 Porphyrin metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
osa04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00053 Ascorbate and aldarate metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00730 Thiamine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5717588 837797 100800113 100793679 101261350 4340044 100125655 103872006 103843128 100256891 18094418 11407134 123167378 123150475 123087871 123408852 107936380 107941637 107946968 111206485 106402160 106445582 110431214 102604367 102612769 100834344 107782632 107774235
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