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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g228900v5   uncharacterized protein 
 ath-u.5   AT4G06599   ubiquitin family protein 
 gma-u.5   100812010   ubiquitin-like domain-containing CTD phosphatase-like 
 gma-u.5   100785704   ubiquitin-like domain-containing CTD phosphatase-like 
 sly-u.5   101247564   ubiquitin-like domain-containing CTD phosphatase 
 osa-u.5   4324776   ubiquitin-like domain-containing CTD phosphatase 
 zma-u.5   100282666   uncharacterized LOC100282666 
 vvi-u.5   100262993   ubiquitin-like domain-containing CTD phosphatase 
 ppo-u.5   18098281   ubiquitin-like domain-containing CTD phosphatase 
 ppo-u.5   7480747   ubiquitin-like domain-containing CTD phosphatase 
 mtr-u.5   11408214   ubiquitin-like domain-containing CTD phosphatase 

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Top 50 coexpressed genes to CHLRE_04g228900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g228900v5 (cre-r.1 coexpression data)

CoexMap"5717827"


creCHLRE_04g228900v5 | Entrez gene ID : 5717827      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0004721 [list] [network] phosphoprotein phosphatase activity  (73 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042925419.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  cysk_nucl 1,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_042925419.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042925419.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g228900v5

.
ath-u.5
for
AT4G06599

.
gma-u.5
for
100812010

.
gma-u.5
for
100785704

.
sly-u.5
for
101247564

.
osa-u.5
for
4324776

.
zma-u.5
for
100282666

.
vvi-u.5
for
100262993

.
ppo-u.5
for
18098281

.
ppo-u.5
for
7480747

.
mtr-u.5
for
11408214

.


Ortholog ID: 9559
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G06599 LOC100785704 LOC100812010 LOC101247564 LOC4324776 LOC100282666 LOC103868335 LOC100262993 LOC18098281 LOC7480747 LOC11408214 LOC123079943 LOC123071597 LOC123444756 LOC107927816 LOC107907706 LOC106437470 LOC106375872 CHLRE_04g228900v5 LOC8063118 LOC102598505 LOC102613626 LOC100845076 LOC107791500 LOC107763910
Function* ubiquitin family protein ubiquitin-like domain-containing CTD phosphatase-like ubiquitin-like domain-containing CTD phosphatase-like ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase uncharacterized LOC100282666 putative WEB family protein At4g17210 ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase uncharacterized protein ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase ubiquitin-like domain-containing CTD phosphatase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma03050 Proteasome 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma04712 Circadian rhythm - plant 2
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo04141 Protein processing in endoplasmic reticulum 4
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae03050 Proteasome 5
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 5
tae03060 Protein export 3
tae03250 Viral life cycle - HIV-1 2
tae03272 Virion - Hepatitis viruses 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 8
hvu00071 Fatty acid degradation 2
hvu00280 Valine, leucine and isoleucine degradation 2
hvu01212 Fatty acid metabolism 2
hvu00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00010 Glycolysis / Gluconeogenesis 3
ghi00562 Inositol phosphate metabolism 3
ghi00340 Histidine metabolism 2
ghi00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi01230 Biosynthesis of amino acids 4
ghi00010 Glycolysis / Gluconeogenesis 3
ghi00562 Inositol phosphate metabolism 3
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 5
nta04141 Protein processing in endoplasmic reticulum 3
nta00100 Steroid biosynthesis 2
nta03050 Proteasome 2
nta00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 5
nta00100 Steroid biosynthesis 2
nta00190 Oxidative phosphorylation 2
nta00902 Monoterpenoid biosynthesis 2
nta00350 Tyrosine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826068 100785704 100812010 101247564 4324776 100282666 103868335 100262993 18098281 7480747 11408214 123079943 123071597 123444756 107927816 107907706 106437470 106375872 5717827 8063118 102598505 102613626 100845076 107791500 107763910
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