Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g230144v5   uncharacterized protein 
 ath-u.5   SPT1   serine palmitoyltransferase 1 
 ath-u.5   LCB2   long chain base2 
 gma-u.5   100803194   long chain base biosynthesis protein 2a 
 gma-u.5   100789635   long chain base biosynthesis protein 2a 
 sly-u.5   101254177   serine palmitoyltransferase 
 sly-u.5   101246439   long chain base biosynthesis protein 2a-like 
 sly-u.5   101257268   long chain base biosynthesis protein 2a-like 
 osa-u.5   4350591   long chain base biosynthesis protein 2a-like 
 zma-u.5   732780   long chain base biosynthesis protein 2d 
 zma-u.5   103648713   long chain base biosynthesis protein 2a 
 zma-u.5   103652945   long chain base biosynthesis protein 2a 
 vvi-u.5   100249818   long chain base biosynthesis protein 2a 
 vvi-u.5   100249169   long chain base biosynthesis protein 2a 
 ppo-u.5   7454589   long chain base biosynthesis protein 2a 
 ppo-u.5   7486392   long chain base biosynthesis protein 2a 
 mtr-u.5   25495905   long chain base biosynthesis protein 2a 

close


Top 50 coexpressed genes to CHLRE_04g230144v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CHLRE_04g230144v5 (cre-r.1 coexpression data)

CoexMap"5717833"


creCHLRE_04g230144v5 | Entrez gene ID : 5717833    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 3 1 3 2 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00600 [list] [network] Sphingolipid metabolism (14 genes)
cre04382 [list] [network] Cornified envelope formation (10 genes)
GO BP
GO:0046512 [list] [network] sphingosine biosynthetic process  (4 genes)  IEA  
GO:0046513 [list] [network] ceramide biosynthetic process  (194 genes)  IEA  
GO CC
GO:0017059 [list] [network] serine palmitoyltransferase complex  (1 genes)  IEA  
GO MF
GO:0004758 [list] [network] serine C-palmitoyltransferase activity  (2 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (46 genes)  IEA  
Protein XP_042925448.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  plas 1,  extr 1,  vacu 1,  E.R. 1,  chlo_mito 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_042925448.1)
Subcellular
localization
TargetP
scret 9  (predict for XP_042925448.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g230144v5

.
ath-u.5
for
SPT1

.
ath-u.5
for
LCB2

.
gma-u.5
for
100803194

.
gma-u.5
for
100789635

.
sly-u.5
for
101254177

.
sly-u.5
for
101246439

.
sly-u.5
for
101257268

.
osa-u.5
for
4350591

.
zma-u.5
for
732780

.
zma-u.5
for
103648713

.
zma-u.5
for
103652945

.
vvi-u.5
for
100249818

.
vvi-u.5
for
100249169

.
ppo-u.5
for
7454589

.
ppo-u.5
for
7486392

.
mtr-u.5
for
25495905

.


Ortholog ID: 3814
Species ath ath gma gma sly sly zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol LCB2 SPT1 LOC100803194 LOC100789635 LOC101254177 LOC101257268 LOC103652945 LOC732780 LOC103874866 LOC103873514 LOC100249169 LOC100249818 LOC7454589 LOC7486392 LOC25495905 LOC123072112 LOC123063208 LOC123445320 LOC107944555 LOC107946876 LOC106353243 LOC106387825 CHLRE_04g230144v5 LOC8059396 LOC8055035 LOC102594988 LOC102580157 LOC102617633 LOC102616935 LOC100839037 LOC100835314 LOC107770386 LOC107808909
Function* long chain base2 serine palmitoyltransferase 1 long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a serine palmitoyltransferase long chain base biosynthesis protein 2a-like long chain base biosynthesis protein 2a long chain base biosynthesis protein 2d long chain base biosynthesis protein 2b long chain base biosynthesis protein 2b-like long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a long chain base biosynthesis protein 2d long chain base biosynthesis protein 2d long chain base biosynthesis protein 2d long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a long chain base biosynthesis protein 2b-like long chain base biosynthesis protein 2b uncharacterized protein long chain base biosynthesis protein 2d long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a-like long chain base biosynthesis protein 2b long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a-like long chain base biosynthesis protein 2a long chain base biosynthesis protein 2d long chain base biosynthesis protein 2a long chain base biosynthesis protein 2a
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00600 Sphingolipid metabolism 4
gma04382 Cornified envelope formation 4
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04382 Cornified envelope formation 3
gma00600 Sphingolipid metabolism 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
sly04626 Plant-pathogen interaction 2
sly04144 Endocytosis 2
sly04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 3
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00513 Various types of N-glycan biosynthesis 3
zma00600 Sphingolipid metabolism 2
zma04382 Cornified envelope formation 2
zma00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00053 Ascorbate and aldarate metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 4
vvi01230 Biosynthesis of amino acids 4
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00620 Pyruvate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 4
vvi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04145 Phagosome 5
ppo04144 Endocytosis 3
ppo04148 Efferocytosis 3
ppo04382 Cornified envelope formation 3
ppo00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00600 Sphingolipid metabolism 8
tae04382 Cornified envelope formation 8
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00600 Sphingolipid metabolism 9
tae04382 Cornified envelope formation 9
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00600 Sphingolipid metabolism 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00600 Sphingolipid metabolism 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00600 Sphingolipid metabolism 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00600 Sphingolipid metabolism 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
cre00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00600 Sphingolipid metabolism 2
sbi04382 Cornified envelope formation 2
sbi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
sot00600 Sphingolipid metabolism 2
sot04382 Cornified envelope formation 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00600 Sphingolipid metabolism 2
sot04382 Cornified envelope formation 2
sot04144 Endocytosis 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit04382 Cornified envelope formation 2
cit00600 Sphingolipid metabolism 2
cit00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit00600 Sphingolipid metabolism 2
cit04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta00600 Sphingolipid metabolism 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00600 Sphingolipid metabolism 2
nta04382 Cornified envelope formation 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832432 824039 100803194 100789635 101254177 101257268 103652945 732780 103874866 103873514 100249169 100249818 7454589 7486392 25495905 123072112 123063208 123445320 107944555 107946876 106353243 106387825 5717833 8059396 8055035 102594988 102580157 102617633 102616935 100839037 100835314 107770386 107808909
The preparation time of this page was 0.1 [sec].