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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g344050v5   uncharacterized protein 
 ath-u.5   TOZ   Transducin family protein / WD-40 repeat family protein 
 gma-u.5   102665314   uncharacterized LOC102665314 
 gma-u.5   100783244   transducin beta-like protein 3 
 sly-u.5   101246325   protein TORMOZ EMBRYO DEFECTIVE 
 osa-u.5   4336833   protein TORMOZ EMBRYO DEFECTIVE 
 zma-u.5   103642006   transducin beta-like protein 3 
 zma-u.5   100193557   Transducin family protein / WD-40 repeat family protein 
 vvi-u.5   100252767   protein TORMOZ EMBRYO DEFECTIVE 
 ppo-u.5   7493908   protein TORMOZ EMBRYO DEFECTIVE 
 mtr-u.5   25493764   transducin beta-like protein 3 

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Top 50 coexpressed genes to CHLRE_07g344050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g344050v5 (cre-r.1 coexpression data)

CoexMap"5718010"


creCHLRE_07g344050v5 | Entrez gene ID : 5718010    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000472 [list] [network] endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (3 genes)  IEA  
GO:0000480 [list] [network] endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (3 genes)  IEA  
GO CC
GO:0030686 [list] [network] 90S preribosome  (30 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0034511 [list] [network] U3 snoRNA binding  (4 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042922982.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  cyto 1,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_042922982.1)
Subcellular
localization
TargetP
mito 7,  other 3  (predict for XP_042922982.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g344050v5

.
ath-u.5
for
TOZ

.
gma-u.5
for
102665314

.
gma-u.5
for
100783244

.
sly-u.5
for
101246325

.
osa-u.5
for
4336833

.
zma-u.5
for
103642006

.
zma-u.5
for
100193557

.
vvi-u.5
for
100252767

.
ppo-u.5
for
7493908

.
mtr-u.5
for
25493764

.


Ortholog ID: 6968
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol TOZ LOC102665314 LOC100783244 LOC101246325 LOC4336833 LOC100193557 LOC103642006 LOC103851063 LOC103846300 LOC100252767 LOC7493908 LOC25493764 LOC123157014 LOC123167020 LOC123427888 LOC121212515 LOC107920077 LOC106354444 LOC106371983 CHLRE_07g344050v5 LOC8071089 LOC102586043 LOC102617966 LOC100823842 LOC107829068 LOC107785039
Function* Transducin family protein / WD-40 repeat family protein uncharacterized LOC102665314 transducin beta-like protein 3 protein TORMOZ EMBRYO DEFECTIVE protein TORMOZ EMBRYO DEFECTIVE Transducin family protein / WD-40 repeat family protein transducin beta-like protein 3 transducin beta-like protein 3 transducin beta-like protein 3 protein TORMOZ EMBRYO DEFECTIVE protein TORMOZ EMBRYO DEFECTIVE transducin beta-like protein 3 transducin beta-like protein 3 transducin beta-like protein 3 transducin beta-like protein 3 transducin beta-like protein 3 transducin beta-like protein 3 transducin beta-like protein 3 transducin beta-like protein 3 uncharacterized protein transducin beta-like protein 3 transducin beta-like protein 3 protein TORMOZ EMBRYO DEFECTIVE transducin beta-like protein 3 protein TORMOZ EMBRYO DEFECTIVE protein TORMOZ EMBRYO DEFECTIVE
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma00230 Purine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 14
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 13
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831538 102665314 100783244 101246325 4336833 100193557 103642006 103851063 103846300 100252767 7493908 25493764 123157014 123167020 123427888 121212515 107920077 106354444 106371983 5718010 8071089 102586043 102617966 100823842 107829068 107785039
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