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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g350500v5   uncharacterized protein 
 ath-u.5   EMB2247   protein EMBRYO DEFECTIVE 2247 
 gma-u.5   100818869   valine--tRNA ligase, chloroplastic/mitochondrial 2 
 sly-u.5   101264294   valine--tRNA ligase, chloroplastic/mitochondrial 2 
 osa-u.5   4342467   valine--tRNA ligase, chloroplastic/mitochondrial 2 
 zma-u.5   100194398   uncharacterized LOC100194398 
 vvi-u.5   100249893   valine--tRNA ligase, chloroplastic/mitochondrial 2 
 vvi-u.5   100260814   valine--tRNA ligase, chloroplastic/mitochondrial 2 
 vvi-u.5   100253666   valine--tRNA ligase, chloroplastic/mitochondrial 2 
 ppo-u.5   18099392   valine--tRNA ligase, chloroplastic/mitochondrial 2 
 mtr-u.5   25495825   valine--tRNA ligase, chloroplastic/mitochondrial 2 

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Top 50 coexpressed genes to CHLRE_07g350500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g350500v5 (cre-r.1 coexpression data)

CoexMap"5718181"


creCHLRE_07g350500v5 | Entrez gene ID : 5718181      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 3 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00970 [list] [network] Aminoacyl-tRNA biosynthesis (65 genes)
GO BP
GO:0006438 [list] [network] valyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (481 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0004832 [list] [network] valine-tRNA ligase activity  (2 genes)  IEA  
GO:0002161 [list] [network] aminoacyl-tRNA deacylase activity  (14 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042923118.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for XP_042923118.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_042923118.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g350500v5

.
ath-u.5
for
EMB2247

.
gma-u.5
for
100818869

.
sly-u.5
for
101264294

.
osa-u.5
for
4342467

.
zma-u.5
for
100194398

.
vvi-u.5
for
100249893

.
vvi-u.5
for
100260814

.
vvi-u.5
for
100253666

.
ppo-u.5
for
18099392

.
mtr-u.5
for
25495825

.


Ortholog ID: 9667
Species ath gma sly osa zma bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB2247 LOC100818869 LOC101264294 LOC4342467 LOC100194398 LOC103846304 LOC100249893 LOC100260814 LOC18099392 LOC25495825 LOC123052821 LOC123044941 LOC123426161 LOC107934601 LOC107942342 LOC106371987 LOC106387684 CHLRE_07g350500v5 LOC8081158 LOC102583318 LOC102627172 LOC100833141 LOC107803237 LOC107808232
Function* protein EMBRYO DEFECTIVE 2247 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 uncharacterized LOC100194398 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2-like valine--tRNA ligase, chloroplastic/mitochondrial 2 uncharacterized protein valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2 valine--tRNA ligase, chloroplastic/mitochondrial 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 7
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03060 Protein export 3
mtr00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 4
cre00970 Aminoacyl-tRNA biosynthesis 3
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cre00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit00500 Starch and sucrose metabolism 2
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831533 100818869 101264294 4342467 100194398 103846304 100249893 100260814 18099392 25495825 123052821 123044941 123426161 107934601 107942342 106371987 106387684 5718181 8081158 102583318 102627172 100833141 107803237 107808232
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