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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_14g633650v5   uncharacterized protein 
 ath-u.5   EMB2770   pre-mRNA splicing factor-like protein 
 gma-u.5   100783360   protein STABILIZED1 
 gma-u.5   100779042   protein STABILIZED1 
 sly-u.5   101265451   protein STABILIZED1 
 osa-u.5   4349020   protein STABILIZED1 
 zma-u.5   103650586   protein STABILIZED1 
 zma-u.5   103640981   protein STABILIZED1 
 vvi-u.5   100251732   protein STABILIZED1 
 ppo-u.5   7494417   protein STABILIZED1 
 mtr-u.5   25498758   protein STABILIZED1 
 mtr-u.5   11433350   protein STABILIZED1 

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Top 50 coexpressed genes to CHLRE_14g633650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_14g633650v5 (cre-r.1 coexpression data)

CoexMap"5718328"


creCHLRE_14g633650v5 | Entrez gene ID : 5718328      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (1 genes)  IEA  
GO:2000630 [list] [network] positive regulation of miRNA metabolic process  (1 genes)  IEA  
GO:2000636 [list] [network] positive regulation of primary miRNA processing  (1 genes)  IEA  
GO:0000244 [list] [network] spliceosomal tri-snRNP complex assembly  (4 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (18 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (45 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042917140.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  mito 2,  chlo_mito 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_042917140.1)
Subcellular
localization
TargetP
other 6  (predict for XP_042917140.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_14g633650v5

.
ath-u.5
for
EMB2770

.
gma-u.5
for
100783360

.
gma-u.5
for
100779042

.
sly-u.5
for
101265451

.
osa-u.5
for
4349020

.
zma-u.5
for
103650586

.
zma-u.5
for
103640981

.
vvi-u.5
for
100251732

.
ppo-u.5
for
7494417

.
mtr-u.5
for
25498758

.
mtr-u.5
for
11433350

.


Ortholog ID: 8547
Species ath gma gma sly osa zma zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB2770 LOC100783360 LOC100779042 LOC101265451 LOC4349020 LOC103650586 LOC103640981 LOC103846633 LOC100251732 LOC7494417 LOC25498758 LOC11433350 LOC123122797 LOC123181239 LOC123432895 LOC107886763 LOC107909304 LOC106400773 LOC106435139 CHLRE_14g633650v5 LOC8067217 LOC102599306 LOC102618482 LOC100826043 LOC107815942 LOC107791059
Function* pre-mRNA splicing factor-like protein protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 uncharacterized protein protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1 protein STABILIZED1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 9
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 7
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi00270 Cysteine and methionine metabolism 2
ghi04148 Efferocytosis 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 9
ghi00230 Purine metabolism 3
ghi00270 Cysteine and methionine metabolism 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03020 RNA polymerase 4
cre03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827925 100783360 100779042 101265451 4349020 103650586 103640981 103846633 100251732 7494417 25498758 11433350 123122797 123181239 123432895 107886763 107909304 106400773 106435139 5718328 8067217 102599306 102618482 100826043 107815942 107791059
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