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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g532750v5   uncharacterized protein 
 ath-u.5   AT4G36050   endonuclease/exonuclease/phosphatase family protein 
 gma-u.5   121173723   DNA-(apurinic or apyrimidinic site) endonuclease 2-like 
 gma-u.5   100811022   DNA-(apurinic or apyrimidinic site) endonuclease 2 
 gma-u.5   100781120   DNA-(apurinic or apyrimidinic site) endonuclease 2 
 sly-u.5   101246406   DNA-(apurinic or apyrimidinic site) endonuclease 2 
 osa-u.5   4347697   DNA-(apurinic or apyrimidinic site) endonuclease 2 
 zma-u.5   103633096   DNA-(apurinic or apyrimidinic site) lyase 2 
 vvi-u.5   100264349   DNA-(apurinic or apyrimidinic site) endonuclease 2 
 ppo-u.5   18101085   DNA-(apurinic or apyrimidinic site) endonuclease 2 
 mtr-u.5   11443192   DNA-(apurinic or apyrimidinic site) endonuclease 2 

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Top 50 coexpressed genes to CHLRE_12g532750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g532750v5 (cre-r.1 coexpression data)

CoexMap"5718547"


creCHLRE_12g532750v5 | Entrez gene ID : 5718547    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006284 [list] [network] base-excision repair  (17 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0008311 [list] [network] double-stranded DNA 3'-5' DNA exonuclease activity  (4 genes)  IEA  
GO:0003906 [list] [network] DNA-(apurinic or apyrimidinic site) endonuclease activity  (8 genes)  IEA  
GO:0008081 [list] [network] phosphoric diester hydrolase activity  (59 genes)  IEA  
GO:0004519 [list] [network] endonuclease activity  (63 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042918688.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for XP_042918688.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_042918688.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g532750v5

.
ath-u.5
for
AT4G36050

.
gma-u.5
for
121173723

.
gma-u.5
for
100811022

.
gma-u.5
for
100781120

.
sly-u.5
for
101246406

.
osa-u.5
for
4347697

.
zma-u.5
for
103633096

.
vvi-u.5
for
100264349

.
ppo-u.5
for
18101085

.
mtr-u.5
for
11443192

.


Ortholog ID: 9064
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol AT4G36050 LOC100811022 LOC100781120 LOC101246406 LOC4347697 LOC103633096 LOC103870940 LOC100264349 LOC18101085 LOC11443192 LOC123104597 LOC123112864 LOC123400136 LOC107912988 LOC107912813 LOC106446391 CHLRE_12g532750v5 LOC8070906 LOC102587879 LOC102619750 LOC100830878 LOC107812644 LOC107786040
Function* endonuclease/exonuclease/phosphatase family protein DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) lyase 2 DNA-(apurinic or apyrimidinic site) lyase 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 uncharacterized protein DNA-(apurinic or apyrimidinic site) lyase 2 DNA-(apurinic or apyrimidinic site) lyase 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) lyase 2 DNA-(apurinic or apyrimidinic site) endonuclease 2 DNA-(apurinic or apyrimidinic site) endonuclease 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04144 Endocytosis 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu00030 Pentose phosphate pathway 2
hvu00480 Glutathione metabolism 2
hvu00260 Glycine, serine and threonine metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04146 Peroxisome 2
cre00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829761 100811022 100781120 101246406 4347697 103633096 103870940 100264349 18101085 11443192 123104597 123112864 123400136 107912988 107912813 106446391 5718547 8070906 102587879 102619750 100830878 107812644 107786040
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