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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g197550v5   uncharacterized protein 
 ath-u.5   AT1G73240   nucleoporin protein Ndc1-Nup protein 
 gma-u.5   100800150   uncharacterized LOC100800150 
 gma-u.5   100796588   uncharacterized LOC100796588 
 sly-u.5   101265714   uncharacterized LOC101265714 
 osa-u.5   4330343   uncharacterized LOC4330343 
 zma-u.5   103628806   uncharacterized LOC103628806 
 zma-u.5   100278395   uncharacterized LOC100278395 
 vvi-u.5   100256014   uncharacterized LOC100256014 
 ppo-u.5   7455768   uncharacterized LOC7455768 
 mtr-u.5   11428584   uncharacterized LOC11428584 
 mtr-u.5   11438321   uncharacterized LOC11438321 
 mtr-u.5   25500152   uncharacterized LOC25500152 

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Top 50 coexpressed genes to CHLRE_03g197550v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g197550v5 (cre-r.1 coexpression data)

CoexMap"5718784"


creCHLRE_03g197550v5 | Entrez gene ID : 5718784      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03013 [list] [network] Nucleocytoplasmic transport (47 genes)
GO BP
GO:0006999 [list] [network] nuclear pore organization  (3 genes)  IEA  
GO CC
GO:0070762 [list] [network] nuclear pore transmembrane ring  (1 genes)  IEA  
GO MF
GO:0030674 [list] [network] protein-macromolecule adaptor activity  (114 genes)  IEA  
Protein XP_001693297.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  extr 1,  E.R. 1,  chlo 1,  cyto 1,  E.R._vacu 1  (predict for XP_001693297.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001693297.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g197550v5

.
ath-u.5
for
AT1G73240

.
gma-u.5
for
100800150

.
gma-u.5
for
100796588

.
sly-u.5
for
101265714

.
osa-u.5
for
4330343

.
zma-u.5
for
103628806

.
zma-u.5
for
100278395

.
vvi-u.5
for
100256014

.
ppo-u.5
for
7455768

.
mtr-u.5
for
11428584

.
mtr-u.5
for
11438321

.
mtr-u.5
for
25500152

.


Ortholog ID: 8310
Species ath gma gma sly osa zma zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi cit bdi nta nta
Symbol AT1G73240 LOC100800150 LOC100796588 LOC101265714 LOC4330343 LOC103628806 LOC100278395 LOC103831805 LOC100256014 LOC7455768 LOC11428584 LOC25500139 LOC123137799 LOC123145114 LOC123415204 LOC107916968 LOC121204913 LOC106354259 LOC111207075 CHLRE_03g197550v5 LOC8076023 LOC102627885 LOC100824084 LOC107830617 LOC107760475
Function* nucleoporin protein Ndc1-Nup protein uncharacterized LOC100800150 uncharacterized LOC100796588 uncharacterized LOC101265714 uncharacterized LOC4330343 uncharacterized LOC103628806 uncharacterized LOC100278395 uncharacterized LOC103831805 uncharacterized LOC100256014 uncharacterized LOC7455768 uncharacterized LOC11428584 uncharacterized LOC25500139 uncharacterized LOC123137799 uncharacterized LOC123145114 uncharacterized LOC123415204 uncharacterized LOC107916968 uncharacterized LOC121204913 uncharacterized LOC106354259 uncharacterized LOC111207075 uncharacterized protein uncharacterized LOC8076023 uncharacterized LOC102627885 uncharacterized LOC100824084 uncharacterized LOC107830617 uncharacterized LOC107760475
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 4
gma00513 Various types of N-glycan biosynthesis 4
gma04141 Protein processing in endoplasmic reticulum 4
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 4
gma00513 Various types of N-glycan biosynthesis 4
gma04141 Protein processing in endoplasmic reticulum 4
gma03013 Nucleocytoplasmic transport 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 6
sly00260 Glycine, serine and threonine metabolism 2
sly00750 Vitamin B6 metabolism 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03082 ATP-dependent chromatin remodeling 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03460 Fanconi anemia pathway 3
zma03440 Homologous recombination 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03013 Nucleocytoplasmic transport 4
bra03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 6
ppo01230 Biosynthesis of amino acids 6
ppo00010 Glycolysis / Gluconeogenesis 5
ppo00710 Carbon fixation by Calvin cycle 4
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00514 Other types of O-glycan biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 4
ghi00510 N-Glycan biosynthesis 4
ghi00514 Other types of O-glycan biosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 13
bna03008 Ribosome biogenesis in eukaryotes 4
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 13
bna03008 Ribosome biogenesis in eukaryotes 4
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 2
cre03082 ATP-dependent chromatin remodeling 2
cre03083 Polycomb repressive complex 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 3
cit00510 N-Glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03082 ATP-dependent chromatin remodeling 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03082 ATP-dependent chromatin remodeling 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843658 100800150 100796588 101265714 4330343 103628806 100278395 103831805 100256014 7455768 11428584 25500139 123137799 123145114 123415204 107916968 121204913 106354259 111207075 5718784 8076023 102627885 100824084 107830617 107760475
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