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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g204750v5   uncharacterized protein 
 ath-u.5   AT3G02370   tRNA-splicing endonuclease subunit 
 ath-u.5   AT3G57360   tRNA-splicing endonuclease subunit 
 gma-u.5   100799269   uncharacterized LOC100799269 
 sly-u.5   101263683   uncharacterized LOC101263683 
 sly-u.5   101248925   probable tRNA-splicing endonuclease subunit sen54 
 osa-u.5   4347501   uncharacterized LOC4347501 
 zma-u.5   100193120   uncharacterized LOC100193120 
 vvi-u.5   100257347   uncharacterized LOC100257347 
 ppo-u.5   18106521   uncharacterized LOC18106521 
 mtr-u.5   25501896   uncharacterized LOC25501896 

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Top 50 coexpressed genes to CHLRE_03g204750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g204750v5 (cre-r.1 coexpression data)

CoexMap"5718863"


creCHLRE_03g204750v5 | Entrez gene ID : 5718863    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 2 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000379 [list] [network] tRNA-type intron splice site recognition and cleavage  (3 genes)  IEA  
GO CC
GO:0000214 [list] [network] tRNA-intron endonuclease complex  (2 genes)  IEA  
GO MF
Protein XP_042926494.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 3,  cyto 1  (predict for XP_042926494.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042926494.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g204750v5

.
ath-u.5
for
AT3G02370

.
ath-u.5
for
AT3G57360

.
gma-u.5
for
100799269

.
sly-u.5
for
101263683

.
sly-u.5
for
101248925

.
osa-u.5
for
4347501

.
zma-u.5
for
100193120

.
vvi-u.5
for
100257347

.
ppo-u.5
for
18106521

.
mtr-u.5
for
25501896

.


Ortholog ID: 4726
Species ath ath gma sly sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi cre sbi sot sot cit bdi nta nta
Symbol AT3G57360 AT3G02370 LOC100799269 LOC101263683 LOC101248925 LOC4347501 LOC100193120 LOC103863050 LOC100257347 LOC18106521 LOC25501896 LOC123104287 LOC123104289 LOC123399708 LOC123399712 LOC121213987 LOC107922143 CHLRE_03g204750v5 LOC8084352 LOC102592019 LOC102583437 LOC102630019 LOC100839648 LOC107819777 LOC107801623
Function* tRNA-splicing endonuclease subunit tRNA-splicing endonuclease subunit uncharacterized LOC100799269 uncharacterized LOC101263683 probable tRNA-splicing endonuclease subunit sen54 uncharacterized LOC4347501 uncharacterized LOC100193120 uncharacterized LOC103863050 uncharacterized LOC100257347 uncharacterized LOC18106521 uncharacterized LOC25501896 uncharacterized LOC123104287 uncharacterized LOC123104289 uncharacterized LOC123399708 uncharacterized LOC123399712 uncharacterized LOC121213987 uncharacterized LOC107922143 uncharacterized protein tRNA-splicing endonuclease subunit Sen54 tRNA-splicing endonuclease subunit Sen54 tRNA-splicing endonuclease subunit Sen54-like uncharacterized LOC102630019 uncharacterized LOC100839648 putative tRNA-splicing endonuclease subunit sen54 putative tRNA-splicing endonuclease subunit sen54
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo03040 Spliceosome 2
ppo00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00020 Citrate cycle (TCA cycle) 2
ghi00310 Lysine degradation 2
ghi00380 Tryptophan metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00020 Citrate cycle (TCA cycle) 2
ghi00310 Lysine degradation 2
ghi00380 Tryptophan metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824903 821119 100799269 101263683 101248925 4347501 100193120 103863050 100257347 18106521 25501896 123104287 123104289 123399708 123399712 121213987 107922143 5718863 8084352 102592019 102583437 102630019 100839648 107819777 107801623
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