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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g564250v5   uncharacterized protein 
 ath-u.5   EIF3A   eukaryotic translation initiation factor 3A 
 gma-u.5   100782598   eukaryotic translation initiation factor 3 subunit A 
 gma-u.5   100803796   eukaryotic translation initiation factor 3 subunit A 
 sly-u.5   101263839   eukaryotic translation initiation factor 3 subunit A-like 
 sly-u.5   101260094   eukaryotic translation initiation factor 3 subunit A-like 
 osa-u.5   4326038   eukaryotic translation initiation factor 3 subunit A 
 zma-u.5   542747   eukaryotic initiation factor 3 
 zma-u.5   103636806   eukaryotic translation initiation factor 3 subunit A-like 
 vvi-u.5   100244162   eukaryotic translation initiation factor 3 subunit A 
 ppo-u.5   7481705   eukaryotic translation initiation factor 3 subunit A 
 ppo-u.5   18098628   eukaryotic translation initiation factor 3 subunit A 
 mtr-u.5   11428220   eukaryotic translation initiation factor 3 subunit A 
 mtr-u.5   11435937   eukaryotic translation initiation factor 3 subunit A 
 mtr-u.5   11433412   eukaryotic translation initiation factor 3 subunit A 

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Top 50 coexpressed genes to CHLRE_13g564250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g564250v5 (cre-r.1 coexpression data)

CoexMap"5719002"


creCHLRE_13g564250v5 | Entrez gene ID : 5719002      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 2 1 2 1 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002188 [list] [network] translation reinitiation  (2 genes)  IEA  
GO:0001732 [list] [network] formation of cytoplasmic translation initiation complex  (3 genes)  IEA  
GO CC
GO:0071540 [list] [network] eukaryotic translation initiation factor 3 complex, eIF3e  (1 genes)  IEA  
GO:0043614 [list] [network] multi-eIF complex  (2 genes)  IEA  
GO:0071541 [list] [network] eukaryotic translation initiation factor 3 complex, eIF3m  (3 genes)  IEA  
GO MF
GO:0003743 [list] [network] translation initiation factor activity  (37 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
Protein XP_042917205.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 3,  mito 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_042917205.1)
Subcellular
localization
TargetP
mito 8,  other 5  (predict for XP_042917205.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g564250v5

.
ath-u.5
for
EIF3A

.
gma-u.5
for
100782598

.
gma-u.5
for
100803796

.
sly-u.5
for
101263839

.
sly-u.5
for
101260094

.
osa-u.5
for
4326038

.
zma-u.5
for
542747

.
zma-u.5
for
103636806

.
vvi-u.5
for
100244162

.
ppo-u.5
for
7481705

.
ppo-u.5
for
18098628

.
mtr-u.5
for
11428220

.
mtr-u.5
for
11435937

.
mtr-u.5
for
11433412

.


Ortholog ID: 3599
Species ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi nta nta
Symbol EIF3A LOC100782598 LOC100803796 LOC101260094 LOC101263839 LOC4326038 LOC542747 LOC103636806 LOC103833861 LOC103858603 LOC100244162 LOC7481705 LOC18098628 LOC11428220 LOC11428993 LOC123154187 LOC123068249 LOC123442514 LOC121209347 LOC107894061 LOC111212580 LOC106422370 CHLRE_13g564250v5 LOC8070431 LOC8084361 LOC102596360 LOC102585101 LOC102609271 LOC102617782 LOC100837986 LOC107760201 LOC107782623
Function* eukaryotic translation initiation factor 3A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A-like eukaryotic translation initiation factor 3 subunit A-like eukaryotic translation initiation factor 3 subunit A eukaryotic initiation factor 3 eukaryotic translation initiation factor 3 subunit A-like eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A-like eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A uncharacterized protein eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A-like eukaryotic translation initiation factor 3 subunit A-like eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A-like eukaryotic translation initiation factor 3 subunit A eukaryotic translation initiation factor 3 subunit A-like eukaryotic translation initiation factor 3 subunit A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly00010 Glycolysis / Gluconeogenesis 3
sly01200 Carbon metabolism 3
sly00020 Citrate cycle (TCA cycle) 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03040 Spliceosome 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 5
ghi00500 Starch and sucrose metabolism 5
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03015 mRNA surveillance pathway 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826746 100782598 100803796 101260094 101263839 4326038 542747 103636806 103833861 103858603 100244162 7481705 18098628 11428220 11428993 123154187 123068249 123442514 121209347 107894061 111212580 106422370 5719002 8070431 8084361 102596360 102585101 102609271 102617782 100837986 107760201 107782623
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