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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g575950v5   uncharacterized protein 
 ath-u.5   HIRA   histone chaperone HIRA-like protein 
 gma-u.5   100806306   protein HIRA 
 gma-u.5   100802265   protein HIRA 
 sly-u.5   101255760   protein HIRA 
 osa-u.5   4347889   protein HIRA-like 
 zma-u.5   100384176   homolog of histone chaperone HIRA 
 zma-u.5   103649649   protein HIRA-like 
 vvi-u.5   100264905   protein HIRA 
 ppo-u.5   18102183   protein HIRA 
 ppo-u.5   18097952   protein HIRA 
 mtr-u.5   25492293   protein HIRA 
 mtr-u.5   11408126   protein HIRA 

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Top 50 coexpressed genes to CHLRE_13g575950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g575950v5 (cre-r.1 coexpression data)

CoexMap"5719232"


creCHLRE_13g575950v5 | Entrez gene ID : 5719232      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (95 genes)  IEA  
GO:0006338 [list] [network] chromatin remodeling  (106 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO:0000417 [list] [network] HIR complex  (1 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0031491 [list] [network] nucleosome binding  (17 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_001693528.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  E.R._plas 4,  E.R. 2,  mito 1  (predict for XP_001693528.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001693528.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g575950v5

.
ath-u.5
for
HIRA

.
gma-u.5
for
100806306

.
gma-u.5
for
100802265

.
sly-u.5
for
101255760

.
osa-u.5
for
4347889

.
zma-u.5
for
100384176

.
zma-u.5
for
103649649

.
vvi-u.5
for
100264905

.
ppo-u.5
for
18102183

.
ppo-u.5
for
18097952

.
mtr-u.5
for
25492293

.
mtr-u.5
for
11408126

.


Ortholog ID: 7605
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol HIRA LOC100806306 LOC100802265 LOC101255760 LOC4347889 LOC103649649 LOC100384176 LOC103873655 LOC100264905 LOC18097952 LOC18102183 LOC25492293 LOC11408126 LOC123087394 LOC123095591 LOC123446862 LOC107948083 LOC107959371 LOC106347669 LOC106396904 CHLRE_13g575950v5 LOC8062538 LOC8083942 LOC102602385 LOC102617233 LOC100827726 LOC107818276 LOC107828920
Function* histone chaperone HIRA-like protein protein HIRA protein HIRA protein HIRA protein HIRA-like protein HIRA-like homolog of histone chaperone HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA-like protein HIRA uncharacterized protein protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA protein HIRA
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 4
mtr03013 Nucleocytoplasmic transport 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03040 Spliceosome 5
tae03013 Nucleocytoplasmic transport 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 4
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03420 Nucleotide excision repair 6
cre03430 Mismatch repair 6
cre03410 Base excision repair 4
cre03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823578 100806306 100802265 101255760 4347889 103649649 100384176 103873655 100264905 18097952 18102183 25492293 11408126 123087394 123095591 123446862 107948083 107959371 106347669 106396904 5719232 8062538 8083942 102602385 102617233 100827726 107818276 107828920
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