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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g578750v5   uncharacterized protein 
 ath-u.5   PYD1   pyrimidine 1 
 gma-u.5   100818990   dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic 
 gma-u.5   100804632   NAD-dependent dihydropyrimidine dehydrogenase subunit PreA-like 
 sly-u.5   PYD1A   putative dehydrogenase 
 osa-u.5   4330657   dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic 
 zma-u.5   100274265   uncharacterized LOC100274265 
 vvi-u.5   100249021   dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic 
 ppo-u.5   18105605   dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic 
 mtr-u.5   11414639   dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic 

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Top 50 coexpressed genes to CHLRE_13g578750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g578750v5 (cre-r.1 coexpression data)

CoexMap"5719283"


creCHLRE_13g578750v5 | Entrez gene ID : 5719283      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00240 [list] [network] Pyrimidine metabolism (36 genes)
cre00410 [list] [network] beta-Alanine metabolism (14 genes)
cre00770 [list] [network] Pantothenate and CoA biosynthesis (16 genes)
GO BP
GO:0006212 [list] [network] uracil catabolic process  (1 genes)  IEA  
GO:0006210 [list] [network] thymine catabolic process  (2 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0002058 [list] [network] uracil binding  (1 genes)  IEA  
GO:0017113 [list] [network] dihydropyrimidine dehydrogenase (NADP+) activity  (1 genes)  IEA  
GO:0050661 [list] [network] NADP binding  (31 genes)  IEA  
GO:0051536 [list] [network] iron-sulfur cluster binding  (89 genes)  IEA  
Protein XP_042917487.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 5,  mito 4  (predict for XP_042917487.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_042917487.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g578750v5

.
ath-u.5
for
PYD1

.
gma-u.5
for
100818990

.
gma-u.5
for
100804632

.
sly-u.5
for
PYD1A

.
osa-u.5
for
4330657

.
zma-u.5
for
100274265

.
vvi-u.5
for
100249021

.
ppo-u.5
for
18105605

.
mtr-u.5
for
11414639

.


Ortholog ID: 8008
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PYD1 LOC100804632 LOC100818990 PYD1A LOC4330657 LOC100274265 LOC103839011 LOC103869649 LOC100249021 LOC18105605 LOC11414639 LOC123128329 LOC123138178 LOC123401718 LOC107890863 LOC121206239 LOC106452022 LOC106427199 CHLRE_13g578750v5 LOC8068612 LOC102599024 LOC102610369 LOC100844077 LOC107809801 LOC107809767
Function* pyrimidine 1 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA-like dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic putative dehydrogenase dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic uncharacterized LOC100274265 dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic uncharacterized protein dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00410 beta-Alanine metabolism 4
ath00240 Pyrimidine metabolism 3
ath00770 Pantothenate and CoA biosynthesis 3
ath00071 Fatty acid degradation 2
ath00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 2
gma00410 beta-Alanine metabolism 2
gma00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 4
gma00240 Pyrimidine metabolism 2
gma00410 beta-Alanine metabolism 2
gma00770 Pantothenate and CoA biosynthesis 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 6
sly04145 Phagosome 5
sly04142 Lysosome 2
sly00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00280 Valine, leucine and isoleucine degradation 6
osa00640 Propanoate metabolism 3
osa00410 beta-Alanine metabolism 2
osa01200 Carbon metabolism 2
osa00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 4
zma04145 Phagosome 4
zma00410 beta-Alanine metabolism 4
zma04148 Efferocytosis 3
zma00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00410 beta-Alanine metabolism 4
bra00071 Fatty acid degradation 4
bra01212 Fatty acid metabolism 4
bra00240 Pyrimidine metabolism 3
bra00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00071 Fatty acid degradation 5
bra00410 beta-Alanine metabolism 5
bra01212 Fatty acid metabolism 5
bra00592 alpha-Linolenic acid metabolism 4
bra01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00071 Fatty acid degradation 3
vvi01212 Fatty acid metabolism 3
vvi00592 alpha-Linolenic acid metabolism 2
vvi00410 beta-Alanine metabolism 2
vvi00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo00410 beta-Alanine metabolism 2
ppo04142 Lysosome 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 5
mtr01210 2-Oxocarboxylic acid metabolism 4
mtr00630 Glyoxylate and dicarboxylate metabolism 3
mtr01200 Carbon metabolism 3
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00280 Valine, leucine and isoleucine degradation 7
tae00410 beta-Alanine metabolism 6
tae00640 Propanoate metabolism 5
tae00240 Pyrimidine metabolism 3
tae00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae00410 beta-Alanine metabolism 3
tae00770 Pantothenate and CoA biosynthesis 3
tae00073 Cutin, suberine and wax biosynthesis 3
tae00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01210 2-Oxocarboxylic acid metabolism 3
hvu00071 Fatty acid degradation 2
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00410 beta-Alanine metabolism 2
hvu00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
ghi00240 Pyrimidine metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00220 Arginine biosynthesis 3
ghi00250 Alanine, aspartate and glutamate metabolism 3
ghi00910 Nitrogen metabolism 3
ghi01200 Carbon metabolism 3
ghi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 6
bna00410 beta-Alanine metabolism 6
bna00770 Pantothenate and CoA biosynthesis 6
bna00500 Starch and sucrose metabolism 4
bna00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 7
bna00410 beta-Alanine metabolism 7
bna00770 Pantothenate and CoA biosynthesis 7
bna00052 Galactose metabolism 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre00410 beta-Alanine metabolism 2
cre00770 Pantothenate and CoA biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
sbi00270 Cysteine and methionine metabolism 3
sbi00350 Tyrosine metabolism 3
sbi00360 Phenylalanine metabolism 3
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01210 2-Oxocarboxylic acid metabolism 2
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00071 Fatty acid degradation 4
bdi01212 Fatty acid metabolism 4
bdi01240 Biosynthesis of cofactors 3
bdi01200 Carbon metabolism 3
bdi00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00410 beta-Alanine metabolism 6
nta00770 Pantothenate and CoA biosynthesis 6
nta04136 Autophagy - other 4
nta00240 Pyrimidine metabolism 4
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00410 beta-Alanine metabolism 6
nta00770 Pantothenate and CoA biosynthesis 6
nta00240 Pyrimidine metabolism 4
nta04136 Autophagy - other 3
nta04142 Lysosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821049 100804632 100818990 543719 4330657 100274265 103839011 103869649 100249021 18105605 11414639 123128329 123138178 123401718 107890863 121206239 106452022 106427199 5719283 8068612 102599024 102610369 100844077 107809801 107809767
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