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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g549700v5   uncharacterized protein 
 ath-u.5   AT3G13230   RNA-binding KH domain-containing protein 
 gma-u.5   100788055   RNA-binding protein pno1-like 
 gma-u.5   100784865   RNA-binding protein pno1 
 gma-u.5   102659733   RNA-binding protein pno1 
 sly-u.5   101268583   uncharacterized LOC101268583 
 osa-u.5   4331393   uncharacterized LOC4331393 
 osa-u.5   107276702   uncharacterized LOC107276702 
 zma-u.5   100283335   partner of Nob1 
 zma-u.5   100274503   uncharacterized LOC100274503 
 vvi-u.5   100254291   uncharacterized LOC100254291 
 vvi-u.5   100249193   uncharacterized LOC100249193 
 ppo-u.5   7457657   uncharacterized LOC7457657 
 ppo-u.5   18103541   uncharacterized LOC18103541 
 mtr-u.5   11444321   RNA-binding protein pno1 

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Top 50 coexpressed genes to CHLRE_12g549700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g549700v5 (cre-r.1 coexpression data)

CoexMap"5719646"


creCHLRE_12g549700v5 | Entrez gene ID : 5719646      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 3 1 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001694122.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  mito 4,  nucl_plas 1  (predict for XP_001694122.2)
Subcellular
localization
TargetP
other 8  (predict for XP_001694122.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g549700v5

.
ath-u.5
for
AT3G13230

.
gma-u.5
for
100788055

.
gma-u.5
for
100784865

.
gma-u.5
for
102659733

.
sly-u.5
for
101268583

.
osa-u.5
for
4331393

.
osa-u.5
for
107276702

.
zma-u.5
for
100283335

.
zma-u.5
for
100274503

.
vvi-u.5
for
100254291

.
vvi-u.5
for
100249193

.
ppo-u.5
for
7457657

.
ppo-u.5
for
18103541

.
mtr-u.5
for
11444321

.


Ortholog ID: 6552
Species ath gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT3G13230 LOC100788055 LOC102659733 LOC101268583 LOC4331393 LOC107276702 LOC100274503 LOC100283335 LOC103870187 LOC100254291 LOC100249193 LOC7457657 LOC18103541 LOC11444321 LOC123060774 LOC123069341 LOC123447844 LOC107895162 LOC107903381 LOC106452336 LOC106372550 CHLRE_12g549700v5 LOC8082379 LOC102579439 LOC102629188 LOC102614183 LOC100830709 LOC107818006 LOC107807302
Function* RNA-binding KH domain-containing protein RNA-binding protein pno1-like RNA-binding protein pno1 uncharacterized LOC101268583 uncharacterized LOC4331393 uncharacterized LOC107276702 uncharacterized LOC100274503 partner of Nob1 RNA-binding protein PNO1 uncharacterized LOC100254291 uncharacterized LOC100249193 uncharacterized LOC7457657 uncharacterized LOC18103541 RNA-binding protein pno1 RNA-binding protein pno1 RNA-binding protein pno1 RNA-binding protein pno1 RNA-binding protein pno1 RNA-binding protein pno1 RNA-binding protein PNO1-like RNA-binding protein PNO1 uncharacterized protein RNA-binding protein pno1 RNA-binding protein pno1 uncharacterized LOC102629188 uncharacterized LOC102614183 RNA-binding protein pno1 uncharacterized LOC107818006 uncharacterized LOC107807302
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
ath03008 Ribosome biogenesis in eukaryotes 2
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi04626 Plant-pathogen interaction 2
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna00230 Purine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna00230 Purine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit03010 Ribosome 2
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820521 100788055 102659733 101268583 4331393 107276702 100274503 100283335 103870187 100254291 100249193 7457657 18103541 11444321 123060774 123069341 123447844 107895162 107903381 106452336 106372550 5719646 8082379 102579439 102629188 102614183 100830709 107818006 107807302
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