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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_08g374050v5   uncharacterized protein 
 ath-u.5   POLD2   DNA polymerase delta small subunit 
 gma-u.5   100805951   DNA polymerase delta small subunit 
 gma-u.5   100780072   DNA polymerase delta small subunit 
 sly-u.5   101243681   DNA polymerase delta small subunit 
 osa-u.5   4331489   DNA polymerase delta small subunit-like 
 zma-u.5   100382167   DNA polymerase delta small subunit 
 vvi-u.5   100241865   DNA polymerase delta small subunit 
 ppo-u.5   7479528   DNA polymerase delta small subunit 
 mtr-u.5   11437014   DNA polymerase delta small subunit 

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Top 50 coexpressed genes to CHLRE_08g374050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_08g374050v5 (cre-r.1 coexpression data)

CoexMap"5719973"


creCHLRE_08g374050v5 | Entrez gene ID : 5719973      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
cre03410 [list] [network] Base excision repair (25 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
cre03430 [list] [network] Mismatch repair (15 genes)
cre03440 [list] [network] Homologous recombination (15 genes)
GO BP
GO:0006271 [list] [network] DNA strand elongation involved in DNA replication  (14 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO CC
GO:0043625 [list] [network] delta DNA polymerase complex  (5 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042922133.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1,  chlo_mito 1  (predict for XP_042922133.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042922133.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_08g374050v5

.
ath-u.5
for
POLD2

.
gma-u.5
for
100805951

.
gma-u.5
for
100780072

.
sly-u.5
for
101243681

.
osa-u.5
for
4331489

.
zma-u.5
for
100382167

.
vvi-u.5
for
100241865

.
ppo-u.5
for
7479528

.
mtr-u.5
for
11437014

.


Ortholog ID: 9431
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol POLD2 LOC100780072 LOC100805951 LOC101243681 LOC4331489 LOC100382167 LOC103865926 LOC100241865 LOC7479528 LOC11437014 LOC123093569 LOC123098837 LOC123449800 LOC107899677 LOC107948426 LOC111197870 LOC106391737 CHLRE_08g374050v5 LOC8061443 LOC102602022 LOC102626465 LOC100831775 LOC107791893 LOC107799905
Function* DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit-like DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit uncharacterized protein DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit DNA polymerase delta small subunit
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 4
ath03410 Base excision repair 4
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 4
gma03083 Polycomb repressive complex 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 3
gma01210 2-Oxocarboxylic acid metabolism 3
gma01230 Biosynthesis of amino acids 3
gma03082 ATP-dependent chromatin remodeling 2
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 4
osa03030 DNA replication 3
osa03008 Ribosome biogenesis in eukaryotes 3
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 4
zma03082 ATP-dependent chromatin remodeling 3
zma03030 DNA replication 3
zma03420 Nucleotide excision repair 3
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 6
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 5
vvi03410 Base excision repair 3
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 11
ppo03440 Homologous recombination 4
ppo03420 Nucleotide excision repair 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 6
tae03082 ATP-dependent chromatin remodeling 5
tae03083 Polycomb repressive complex 5
tae03030 DNA replication 5
tae03410 Base excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 8
tae03083 Polycomb repressive complex 5
tae03030 DNA replication 5
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 4
ghi03410 Base excision repair 4
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 4
ghi03410 Base excision repair 4
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 5
sbi03440 Homologous recombination 3
sbi00240 Pyrimidine metabolism 3
sbi01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00240 Pyrimidine metabolism 2
cit01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 3
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 5
nta03420 Nucleotide excision repair 5
nta03410 Base excision repair 4
nta03430 Mismatch repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 5
nta03420 Nucleotide excision repair 5
nta03410 Base excision repair 4
nta03430 Mismatch repair 3
nta03440 Homologous recombination 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818812 100780072 100805951 101243681 4331489 100382167 103865926 100241865 7479528 11437014 123093569 123098837 123449800 107899677 107948426 111197870 106391737 5719973 8061443 102602022 102626465 100831775 107791893 107799905
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