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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g393400v5   uncharacterized protein 
 ath-u.5   G-TMT   gamma-tocopherol methyltransferase 
 gma-u.5   732543   gamma-tocopherol methyltransferase 
 gma-u.5   100778509   probable tocopherol O-methyltransferase, chloroplastic 
 gma-u.5   GAMMA-TMT   gamma-tocopherol methyltransferase 
 sly-u.5   TMT   gamma-tocopherol methyltransferase 
 osa-u.5   4330437   probable tocopherol O-methyltransferase, chloroplastic 
 zma-u.5   732837   vitamin E synthesis4 
 vvi-u.5   100242641   probable tocopherol O-methyltransferase, chloroplastic 
 ppo-u.5   7465624   probable tocopherol O-methyltransferase, chloroplastic 
 mtr-u.5   25481971   tocopherol O-methyltransferase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_09g393400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g393400v5 (cre-r.1 coexpression data)

CoexMap"5720115"


creCHLRE_09g393400v5 | Entrez gene ID : 5720115      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (22 genes)
cre01240 [list] [network] Biosynthesis of cofactors (149 genes)
GO BP
GO:0032259 [list] [network] methylation  (124 genes)  IEA  
GO CC
GO MF
GO:0008757 [list] [network] S-adenosylmethionine-dependent methyltransferase activity  (132 genes)  IEA  
Protein XP_001694470.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_001694470.1)
Subcellular
localization
TargetP
chlo 8,  mito 4  (predict for XP_001694470.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g393400v5

.
ath-u.5
for
G-TMT

.
gma-u.5
for
732543

.
gma-u.5
for
100778509

.
gma-u.5
for
GAMMA-TMT

.
sly-u.5
for
TMT

.
osa-u.5
for
4330437

.
zma-u.5
for
732837

.
vvi-u.5
for
100242641

.
ppo-u.5
for
7465624

.
mtr-u.5
for
25481971

.


Ortholog ID: 6432
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol G-TMT LOC100778509 GAMMA-TMT TMT LOC4330437 LOC732837 LOC103852208 LOC103853294 LOC100242641 LOC7465624 LOC25481971 LOC123128104 LOC780621 LOC123403449 LOC121215348 LOC107920515 LOC125574762 LOC106406285 CHLRE_09g393400v5 LOC8079111 LOC8067143 GAMMA-TMT LOC102628754 LOC100836877 LOC107809106 LOC107793279
Function* gamma-tocopherol methyltransferase probable tocopherol O-methyltransferase, chloroplastic gamma-tocopherol methyltransferase gamma-tocopherol methyltransferase probable tocopherol O-methyltransferase, chloroplastic vitamin E synthesis4 tocopherol O-methyltransferase, chloroplastic tocopherol O-methyltransferase, chloroplastic probable tocopherol O-methyltransferase, chloroplastic probable tocopherol O-methyltransferase, chloroplastic tocopherol O-methyltransferase, chloroplastic probable tocopherol O-methyltransferase, chloroplastic probable tocopherol O-methyltransferase, chloroplastic probable tocopherol O-methyltransferase, chloroplastic tocopherol O-methyltransferase, chloroplastic tocopherol O-methyltransferase, chloroplastic tocopherol O-methyltransferase, chloroplastic-like tocopherol O-methyltransferase, chloroplastic-like uncharacterized protein probable tocopherol O-methyltransferase, chloroplastic probable tocopherol O-methyltransferase, chloroplastic gamma-tocopherol methyltransferase probable tocopherol O-methyltransferase, chloroplastic probable tocopherol O-methyltransferase, chloroplastic gamma-tocopherol methyltransferase, chloroplastic gamma-tocopherol methyltransferase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 6
ath01240 Biosynthesis of cofactors 2
ath00520 Amino sugar and nucleotide sugar metabolism 2
ath01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
gma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
gma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 4
osa00710 Carbon fixation by Calvin cycle 2
osa01200 Carbon metabolism 2
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi00195 Photosynthesis 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00650 Butanoate metabolism 3
tae00660 C5-Branched dibasic acid metabolism 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 3
ghi00260 Glycine, serine and threonine metabolism 2
ghi00270 Cysteine and methionine metabolism 2
ghi00750 Vitamin B6 metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 5
bna01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 5
bna01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
cre01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi00941 Flavonoid biosynthesis 2
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 5
sbi00053 Ascorbate and aldarate metabolism 3
sbi00620 Pyruvate metabolism 3
sbi00010 Glycolysis / Gluconeogenesis 2
sbi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 5
cit00010 Glycolysis / Gluconeogenesis 4
cit00020 Citrate cycle (TCA cycle) 4
cit00620 Pyruvate metabolism 4
cit00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
nta01240 Biosynthesis of cofactors 3
nta00061 Fatty acid biosynthesis 2
nta00071 Fatty acid degradation 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
nta01240 Biosynthesis of cofactors 3
nta00900 Terpenoid backbone biosynthesis 3
nta00061 Fatty acid biosynthesis 2
nta00071 Fatty acid degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842805 100778509 100792443 778248 4330437 732837 103852208 103853294 100242641 7465624 25481971 123128104 780621 123403449 121215348 107920515 125574762 106406285 5720115 8079111 8067143 102577815 102628754 100836877 107809106 107793279
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