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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g393551v5   uncharacterized protein 
 ath-u.5   PRP40C   pre-mRNA-processing protein 40C 
 gma-u.5   100816454   pre-mRNA-processing protein 40C 
 gma-u.5   100815386   pre-mRNA-processing protein 40C 
 gma-u.5   100806139   pre-mRNA-processing protein 40C 
 sly-u.5   101250296   pre-mRNA-processing protein 40C 
 osa-u.5   4348939   pre-mRNA-processing protein 40C 
 zma-u.5   100304231   Pre-mRNA-processing protein 40C 
 vvi-u.5   100254722   pre-mRNA-processing protein 40C 
 ppo-u.5   7498165   pre-mRNA-processing protein 40C 
 ppo-u.5   7481593   pre-mRNA-processing protein 40C 
 mtr-u.5   11443624   pre-mRNA-processing protein 40C 

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Top 50 coexpressed genes to CHLRE_09g393551v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g393551v5 (cre-r.1 coexpression data)

CoexMap"5720117"


creCHLRE_09g393551v5 | Entrez gene ID : 5720117    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 3 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0070063 [list] [network] RNA polymerase binding  (14 genes)  IEA  
GO:0003712 [list] [network] transcription coregulator activity  (73 genes)  IEA  
Protein XP_042920946.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_042920946.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_042920946.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g393551v5

.
ath-u.5
for
PRP40C

.
gma-u.5
for
100816454

.
gma-u.5
for
100815386

.
gma-u.5
for
100806139

.
sly-u.5
for
101250296

.
osa-u.5
for
4348939

.
zma-u.5
for
100304231

.
vvi-u.5
for
100254722

.
ppo-u.5
for
7498165

.
ppo-u.5
for
7481593

.
mtr-u.5
for
11443624

.


Ortholog ID: 8473
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PRP40C LOC100815386 LOC100816454 LOC101250296 LOC4348939 LOC100304231 LOC103869415 LOC100254722 LOC7498165 LOC7481593 LOC11443624 LOC123181118 LOC123121808 LOC123431639 LOC107922278 LOC107918211 LOC106425155 LOC106415981 CHLRE_09g393551v5 LOC8067131 LOC102602660 LOC102613774 LOC100837275 LOC107801978 LOC107826384
Function* pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C Pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C-like uncharacterized protein pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03015 mRNA surveillance pathway 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03015 mRNA surveillance pathway 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 15
tae03013 Nucleocytoplasmic transport 5
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03020 RNA polymerase 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821521 100815386 100816454 101250296 4348939 100304231 103869415 100254722 7498165 7481593 11443624 123181118 123121808 123431639 107922278 107918211 106425155 106415981 5720117 8067131 102602660 102613774 100837275 107801978 107826384
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