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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g394100v5   uncharacterized protein 
 ath-u.5   AP19   associated protein 19 
 ath-u.5   AT4G35410   Clathrin adaptor complex small chain family protein 
 gma-u.5   100306122   clathrin adaptor protein complex small subunit 
 gma-u.5   100499666   putative AP-1 complex subunit sigma-2 
 sly-u.5   101260000   AP-1 complex subunit sigma-2 
 osa-u.5   4334331   AP-1 complex subunit sigma-1 
 zma-u.5   100285461   uncharacterized LOC100285461 
 zma-u.5   100281970   AP-1 complex subunit sigma-2 
 vvi-u.5   100257590   AP-1 complex subunit sigma-1-like 
 vvi-u.5   100251707   AP-1 complex subunit sigma-2 
 ppo-u.5   112323480   AP-1 complex subunit sigma-1 
 ppo-u.5   7464913   AP-1 complex subunit sigma-1 
 mtr-u.5   11428414   AP-1 complex subunit sigma-1 

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Top 50 coexpressed genes to CHLRE_09g394100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g394100v5 (cre-r.1 coexpression data)

CoexMap"5720128"


creCHLRE_09g394100v5 | Entrez gene ID : 5720128      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 1 2 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre04142 [list] [network] Lysosome (27 genes)
GO BP
GO:0006886 [list] [network] intracellular protein transport  (159 genes)  IEA  
GO:0016192 [list] [network] vesicle-mediated transport  (218 genes)  IEA  
GO CC
GO:0030121 [list] [network] AP-1 adaptor complex  (2 genes)  IEA  
GO:0030117 [list] [network] membrane coat  (31 genes)  IEA  
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (3013 genes)  IEA  
GO MF
GO:0035615 [list] [network] clathrin adaptor activity  (4 genes)  IEA  
Protein XP_001694476.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  cyto 2,  cyto_mito 2,  chlo 1,  nucl 1,  cyto_plas 1  (predict for XP_001694476.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_001694476.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g394100v5

.
ath-u.5
for
AP19

.
ath-u.5
for
AT4G35410

.
gma-u.5
for
100306122

.
gma-u.5
for
100499666

.
sly-u.5
for
101260000

.
osa-u.5
for
4334331

.
zma-u.5
for
100285461

.
zma-u.5
for
100281970

.
vvi-u.5
for
100257590

.
vvi-u.5
for
100251707

.
ppo-u.5
for
112323480

.
ppo-u.5
for
7464913

.
mtr-u.5
for
11428414

.


Ortholog ID: 4678
Species ath ath gma sly osa zma zma bra bra vvi vvi ppo mtr tae tae hvu ghi bna bna cre sbi sot cit bdi nta nta
Symbol AP19 AT4G35410 LOC100306122 LOC101260000 LOC4334331 LOC100285461 LOC100281970 LOC103845962 LOC103828348 LOC100257590 LOC100251707 LOC112323480 LOC11428414 LOC123105290 LOC123113562 LOC123452549 LOC107929718 LOC106374182 LOC106447197 CHLRE_09g394100v5 LOC110431764 LOC102603184 LOC102626824 LOC100833430 LOC107829888 LOC107769310
Function* associated protein 19 Clathrin adaptor complex small chain family protein clathrin adaptor protein complex small subunit AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1 uncharacterized LOC100285461 AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1-like AP-1 complex subunit sigma-2 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-2-like AP-1 complex subunit sigma-1 uncharacterized protein AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1 AP-1 complex subunit sigma-1-like AP-1 complex subunit sigma-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00510 N-Glycan biosynthesis 3
ath03060 Protein export 2
ath00513 Various types of N-glycan biosynthesis 2
ath04141 Protein processing in endoplasmic reticulum 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma00190 Oxidative phosphorylation 4
gma04142 Lysosome 4
gma04144 Endocytosis 3
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 7
sly04141 Protein processing in endoplasmic reticulum 3
sly00510 N-Glycan biosynthesis 2
sly00513 Various types of N-glycan biosynthesis 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 4
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 3
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra03060 Protein export 5
bra04141 Protein processing in endoplasmic reticulum 4
bra04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 3
mtr04142 Lysosome 3
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04130 SNARE interactions in vesicular transport 6
tae04144 Endocytosis 4
tae04145 Phagosome 3
tae04142 Lysosome 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00510 N-Glycan biosynthesis 5
tae04141 Protein processing in endoplasmic reticulum 5
tae00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 6
bna04145 Phagosome 6
bna04141 Protein processing in endoplasmic reticulum 2
bna04144 Endocytosis 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04142 Lysosome 6
cre00190 Oxidative phosphorylation 5
cre04145 Phagosome 5
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 4
sot00190 Oxidative phosphorylation 3
sot04145 Phagosome 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi04144 Endocytosis 3
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 3
nta04142 Lysosome 2
nta04070 Phosphatidylinositol signaling system 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 3
nta04142 Lysosome 2
nta03050 Proteasome 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816245 829694 100306122 101260000 4334331 100285461 100281970 103845962 103828348 100257590 100251707 112323480 11428414 123105290 123113562 123452549 107929718 106374182 106447197 5720128 110431764 102603184 102626824 100833430 107829888 107769310
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