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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g398993v5   uncharacterized protein 
 ath-u.5   PDS1   4-hydroxyphenylpyruvate dioxygenase 
 gma-u.5   HPPD   4-hydroxyphenylpyruvate dioxygenase 
 sly-u.5   101257377   4-hydroxyphenylpyruvate dioxygenase-like 
 sly-u.5   101245475   4-hydroxyphenylpyruvate dioxygenase 
 osa-u.5   4328425   4-hydroxyphenylpyruvate dioxygenase 
 vvi-u.5   100248785   4-hydroxyphenylpyruvate dioxygenase 
 ppo-u.5   7480718   4-hydroxyphenylpyruvate dioxygenase 
 mtr-u.5   25482149   4-hydroxyphenylpyruvate dioxygenase 
 mtr-u.5   11433008   4-hydroxyphenylpyruvate dioxygenase 
 mtr-u.5   11442258   4-hydroxyphenylpyruvate dioxygenase 

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Top 50 coexpressed genes to CHLRE_09g398993v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g398993v5 (cre-r.1 coexpression data)

CoexMap"5720385"


creCHLRE_09g398993v5 | Entrez gene ID : 5720385      
Species cre ath gma sly osa vvi ppo mtr sbi nta bra hvu cit bdi sot zma tae bna ghi
Paralog 1 1 1 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (22 genes)
cre00350 [list] [network] Tyrosine metabolism (16 genes)
cre00360 [list] [network] Phenylalanine metabolism (14 genes)
cre01240 [list] [network] Biosynthesis of cofactors (149 genes)
GO BP
GO:0006572 [list] [network] L-tyrosine catabolic process  (3 genes)  IEA  
GO CC
GO MF
GO:0003868 [list] [network] 4-hydroxyphenylpyruvate dioxygenase activity  (2 genes)  IEA  
Protein XP_001694722.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cysk 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_001694722.2)
Subcellular
localization
TargetP
other 7  (predict for XP_001694722.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g398993v5

.
ath-u.5
for
PDS1

.
gma-u.5
for
HPPD

.
sly-u.5
for
101257377

.
sly-u.5
for
101245475

.
osa-u.5
for
4328425

.
vvi-u.5
for
100248785

.
ppo-u.5
for
7480718

.
mtr-u.5
for
25482149

.
mtr-u.5
for
11433008

.
mtr-u.5
for
11442258

.


Ortholog ID: 5877
Species ath gma sly sly osa bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre cre sbi sot sot cit bdi nta nta
Symbol PDS1 HPPD LOC101245475 LOC101257377 LOC4328425 LOC103844028 LOC103843547 LOC100248785 LOC7480718 LOC11433008 LOC11442258 LOC123132423 LOC780622 LOC123401101 LOC107920131 LOC121219377 LOC106420097 LOC125600658 CHLRE_09g398993v5 CHLRE_09g399030v5 LOC8077168 LOC102584109 LOC102595018 LOC102618830 LOC100841334 LOC107774621 LOC107832751
Function* 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase-like 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase-like uncharacterized protein uncharacterized protein 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase-like 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase 4-hydroxyphenylpyruvate dioxygenase-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 5
ath00270 Cysteine and methionine metabolism 3
ath00350 Tyrosine metabolism 3
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 6
gma01210 2-Oxocarboxylic acid metabolism 4
gma00630 Glyoxylate and dicarboxylate metabolism 3
gma01200 Carbon metabolism 3
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 3
sly00310 Lysine degradation 2
sly00350 Tyrosine metabolism 2
sly01240 Biosynthesis of cofactors 2
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 2
osa01210 2-Oxocarboxylic acid metabolism 2
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa00270 Cysteine and methionine metabolism 2
osa00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00350 Tyrosine metabolism 4
bra00360 Phenylalanine metabolism 4
bra00270 Cysteine and methionine metabolism 3
bra01230 Biosynthesis of amino acids 3
bra01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bra00350 Tyrosine metabolism 3
bra00360 Phenylalanine metabolism 3
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo00350 Tyrosine metabolism 2
ppo00360 Phenylalanine metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00350 Tyrosine metabolism 5
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
mtr00360 Phenylalanine metabolism 4
mtr00280 Valine, leucine and isoleucine degradation 3
mtr01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 4
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
mtr00350 Tyrosine metabolism 4
mtr00360 Phenylalanine metabolism 4
mtr01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae00350 Tyrosine metabolism 4
tae00360 Phenylalanine metabolism 4
tae00310 Lysine degradation 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
tae00350 Tyrosine metabolism 6
tae00360 Phenylalanine metabolism 6
tae00270 Cysteine and methionine metabolism 4
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
hvu01240 Biosynthesis of cofactors 2
hvu00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00640 Propanoate metabolism 5
ghi00280 Valine, leucine and isoleucine degradation 5
ghi00071 Fatty acid degradation 4
ghi00410 beta-Alanine metabolism 4
ghi00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00640 Propanoate metabolism 4
ghi00280 Valine, leucine and isoleucine degradation 4
ghi00071 Fatty acid degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
bna00350 Tyrosine metabolism 6
bna00360 Phenylalanine metabolism 6
bna01240 Biosynthesis of cofactors 4
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
bna00350 Tyrosine metabolism 6
bna00360 Phenylalanine metabolism 6
bna01240 Biosynthesis of cofactors 4
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 4
cre01200 Carbon metabolism 3
cre00061 Fatty acid biosynthesis 3
cre01212 Fatty acid metabolism 3
cre00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00350 Tyrosine metabolism 3
cre01240 Biosynthesis of cofactors 3
cre00785 Lipoic acid metabolism 2
cre01200 Carbon metabolism 2
cre01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 2
cit04517 IgSF CAM signaling 2
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00052 Galactose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta04136 Autophagy - other 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837168 100101901 101245475 101257377 4328425 103844028 103843547 100248785 7480718 11433008 11442258 123132423 780622 123401101 107920131 121219377 106420097 125600658 5720385 5720386 8077168 102584109 102595018 102618830 100841334 107774621 107832751
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