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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g399907v5   uncharacterized protein 
 ath-u.5   AT2G45700   sterile alpha motif (SAM) domain-containing protein 
 gma-u.5   100816321   DNA cross-link repair protein SNM1 
 sly-u.5   101266356   uncharacterized LOC101266356 
 osa-u.5   4347162   uncharacterized LOC4347162 
 zma-u.5   103647460   uncharacterized LOC103647460 
 vvi-u.5   100256089   uncharacterized LOC100256089 
 mtr-u.5   11433501   DNA cross-link repair protein SNM1 

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Top 50 coexpressed genes to CHLRE_09g399907v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g399907v5 (cre-r.1 coexpression data)

CoexMap"5720686"


creCHLRE_09g399907v5 | Entrez gene ID : 5720686    
Species cre ath gma sly osa zma vvi mtr ppo hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031848 [list] [network] protection from non-homologous end joining at telomere  (3 genes)  IEA  
GO:0036297 [list] [network] interstrand cross-link repair  (10 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (11 genes)  IEA  
GO CC
GO MF
GO:0035312 [list] [network] 5'-3' DNA exonuclease activity  (4 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (27 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042920822.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  plas 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for XP_042920822.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042920822.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g399907v5

.
ath-u.5
for
AT2G45700

.
gma-u.5
for
100816321

.
sly-u.5
for
101266356

.
osa-u.5
for
4347162

.
zma-u.5
for
103647460

.
vvi-u.5
for
100256089

.
mtr-u.5
for
11433501

.


Ortholog ID: 10722
Species ath gma sly osa zma bra vvi mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G45700 LOC100816321 LOC101266356 LOC4347162 LOC103647460 LOC103866228 LOC100256089 LOC11433501 LOC123103764 LOC123111983 LOC123397531 LOC107961635 LOC107901016 LOC106394261 LOC106452169 CHLRE_09g399907v5 LOC8062739 LOC102596611 LOC102626587 LOC100843196 LOC107799239 LOC107817206
Function* sterile alpha motif (SAM) domain-containing protein DNA cross-link repair protein SNM1 uncharacterized LOC101266356 uncharacterized LOC4347162 uncharacterized LOC103647460 DNA cross-link repair 1A protein uncharacterized LOC100256089 DNA cross-link repair protein SNM1 uncharacterized LOC123103764 uncharacterized LOC123111983 uncharacterized LOC123397531 DNA cross-link repair protein SNM1 DNA cross-link repair protein SNM1 DNA cross-link repair 1A protein DNA cross-link repair protein SNM1 uncharacterized protein uncharacterized LOC8062739 uncharacterized LOC102596611 uncharacterized LOC102626587 uncharacterized LOC100843196 uncharacterized LOC107799239 uncharacterized LOC107817206
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 6
gma01232 Nucleotide metabolism 6
gma03030 DNA replication 5
gma03440 Homologous recombination 3
gma00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 3
zma03015 mRNA surveillance pathway 2
zma03460 Fanconi anemia pathway 2
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 4
nta00240 Pyrimidine metabolism 4
nta00480 Glutathione metabolism 4
nta01232 Nucleotide metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819178 100816321 101266356 4347162 103647460 103866228 100256089 11433501 123103764 123111983 123397531 107961635 107901016 106394261 106452169 5720686 8062739 102596611 102626587 100843196 107799239 107817206
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