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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g402950v5   uncharacterized protein 
 ath-u.5   AT5G08540   ribosomal RNA small subunit methyltransferase J 
 gma-u.5   100804019   uncharacterized LOC100804019 
 gma-u.5   100809862   uncharacterized LOC100809862 
 sly-u.5   101268332   uncharacterized LOC101268332 
 osa-u.5   4336463   uncharacterized LOC4336463 
 zma-u.5   100382145   uncharacterized LOC100382145 
 vvi-u.5   100250766   uncharacterized LOC100250766 
 ppo-u.5   7468476   uncharacterized LOC7468476 
 mtr-u.5   11419833   uncharacterized LOC11419833 

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Top 50 coexpressed genes to CHLRE_09g402950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g402950v5 (cre-r.1 coexpression data)

CoexMap"5720736"


creCHLRE_09g402950v5 | Entrez gene ID : 5720736    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009941 [list] [network] chloroplast envelope  (42 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (43 genes)  IEA  
GO MF
Protein XP_042920762.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_042920762.1)
Subcellular
localization
TargetP
chlo 8,  mito 4  (predict for XP_042920762.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g402950v5

.
ath-u.5
for
AT5G08540

.
gma-u.5
for
100804019

.
gma-u.5
for
100809862

.
sly-u.5
for
101268332

.
osa-u.5
for
4336463

.
zma-u.5
for
100382145

.
vvi-u.5
for
100250766

.
ppo-u.5
for
7468476

.
mtr-u.5
for
11419833

.


Ortholog ID: 8122
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol AT5G08540 LOC100809862 LOC100804019 LOC101268332 LOC4336463 LOC100382145 LOC103847168 LOC103850672 LOC100250766 LOC7468476 LOC11419833 LOC123189833 LOC123053941 LOC123427304 LOC107886924 LOC107909000 LOC106419327 CHLRE_09g402950v5 LOC8082862 LOC102581730 LOC102614493 LOC100830071 LOC107820915 LOC107804349
Function* ribosomal RNA small subunit methyltransferase J uncharacterized LOC100809862 uncharacterized LOC100804019 uncharacterized LOC101268332 uncharacterized LOC4336463 uncharacterized LOC100382145 uncharacterized LOC103847168 uncharacterized LOC103850672 uncharacterized LOC100250766 uncharacterized LOC7468476 uncharacterized LOC11419833 uncharacterized LOC123189833 uncharacterized LOC123053941 uncharacterized LOC123427304 uncharacterized LOC107886924 uncharacterized LOC107909000 uncharacterized LOC106419327 uncharacterized protein uncharacterized LOC8082862 uncharacterized LOC102581730 hypothetical protein uncharacterized LOC100830071 uncharacterized LOC107820915 uncharacterized LOC107804349
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma00660 C5-Branched dibasic acid metabolism 2
gma01210 2-Oxocarboxylic acid metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 6
hvu00290 Valine, leucine and isoleucine biosynthesis 4
hvu01210 2-Oxocarboxylic acid metabolism 4
hvu00660 C5-Branched dibasic acid metabolism 3
hvu00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 3
sbi01240 Biosynthesis of cofactors 2
sbi00261 Monobactam biosynthesis 2
sbi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830754 100809862 100804019 101268332 4336463 100382145 103847168 103850672 100250766 7468476 11419833 123189833 123053941 123427304 107886924 107909000 106419327 5720736 8082862 102581730 102614493 100830071 107820915 107804349
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