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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g145767v5   uncharacterized protein 
 ath-u.5   AT2G32415   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 gma-u.5   100791485   protein RRP6-like 3 
 sly-u.5   101254313   protein RRP6-like 3 
 osa-u.5   107275761   protein RRP6-like 3 
 zma-u.5   103633224   Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 
 vvi-u.5   100261955   protein RRP6-like 3 
 ppo-u.5   18103732   protein RRP6-like 3 
 mtr-u.5   11445200   protein RRP6-like 3 

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Top 50 coexpressed genes to CHLRE_03g145767v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g145767v5 (cre-r.1 coexpression data)

CoexMap"5721247"


creCHLRE_03g145767v5 | Entrez gene ID : 5721247    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0071036 [list] [network] nuclear polyadenylation-dependent snoRNA catabolic process  (2 genes)  IEA  
GO:0071037 [list] [network] nuclear polyadenylation-dependent snRNA catabolic process  (2 genes)  IEA  
GO:0071039 [list] [network] nuclear polyadenylation-dependent CUT catabolic process  (2 genes)  IEA  
GO:0071040 [list] [network] nuclear polyadenylation-dependent antisense transcript catabolic process  (2 genes)  IEA  
GO:0071044 [list] [network] histone mRNA catabolic process  (2 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (7 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (7 genes)  IEA  
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing  (7 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (8 genes)  IEA  
GO CC
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (12 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (22 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
GO:0000166 [list] [network] nucleotide binding  (1539 genes)  IEA  
Protein XP_042925558.1 [sequence] [blastp]
XP_042925559.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 4,  cyto_mito 3  (predict for XP_042925558.1)
chlo 5,  mito 4,  cyto_mito 3  (predict for XP_042925559.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_042925558.1)
mito 6  (predict for XP_042925559.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g145767v5

.
ath-u.5
for
AT2G32415

.
gma-u.5
for
100791485

.
sly-u.5
for
101254313

.
osa-u.5
for
107275761

.
zma-u.5
for
103633224

.
vvi-u.5
for
100261955

.
ppo-u.5
for
18103732

.
mtr-u.5
for
11445200

.


Ortholog ID: 9411
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G32415 LOC100791485 LOC101254313 LOC107275761 LOC103633224 LOC103865199 LOC100261955 LOC18103732 LOC11445200 LOC123052556 LOC123044693 LOC123425908 LOC121228313 LOC107898747 LOC106427697 LOC106453576 CHLRE_03g145767v5 LOC8080744 LOC102587156 LOC102608683 LOC100837522 LOC107759560 LOC107809017
Function* Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 uncharacterized protein protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 3
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817803 100791485 101254313 107275761 103633224 103865199 100261955 18103732 11445200 123052556 123044693 123425908 121228313 107898747 106427697 106453576 5721247 8080744 102587156 102608683 100837522 107759560 107809017
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