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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g676650v5   uncharacterized protein 
 ath-u.5   GAMMA-ADAPTIN 1   gamma-adaptin 1 
 ath-u.5   AT1G60070   Adaptor protein complex AP-1, gamma subunit 
 gma-u.5   100802164   AP-1 complex subunit gamma-2 
 gma-u.5   100817075   AP-1 complex subunit gamma-2 
 gma-u.5   100815152   AP-1 complex subunit gamma-2 
 sly-u.5   101262006   AP-1 complex subunit gamma-2-like 
 sly-u.5   101256586   AP-1 complex subunit gamma-2-like 
 osa-u.5   4331060   AP-1 complex subunit gamma-2 
 osa-u.5   4340249   AP-1 complex subunit gamma-2 
 zma-u.5   100193027   AP-1 complex subunit gamma-1 
 zma-u.5   100381886   AP-1 complex subunit gamma-1 
 zma-u.5   100501945   AP-1 complex subunit gamma-2 
 vvi-u.5   100241508   AP-1 complex subunit gamma-2 
 ppo-u.5   7468838   AP-1 complex subunit gamma-2 
 ppo-u.5   7454966   AP-1 complex subunit gamma-2 
 mtr-u.5   25501281   AP-1 complex subunit gamma-2 
 mtr-u.5   11411112   AP-1 complex subunit gamma-2 

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Top 50 coexpressed genes to CHLRE_16g676650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g676650v5 (cre-r.1 coexpression data)

CoexMap"5721486"


creCHLRE_16g676650v5 | Entrez gene ID : 5721486      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 2 2 3 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre04142 [list] [network] Lysosome (27 genes)
GO BP
GO:0006896 [list] [network] Golgi to vacuole transport  (4 genes)  IEA  
GO:0006898 [list] [network] receptor-mediated endocytosis  (11 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (159 genes)  IEA  
GO CC
GO:0030121 [list] [network] AP-1 adaptor complex  (2 genes)  IEA  
GO:0030117 [list] [network] membrane coat  (31 genes)  IEA  
GO:0005794 [list] [network] Golgi apparatus  (203 genes)  IEA  
GO MF
GO:0035615 [list] [network] clathrin adaptor activity  (4 genes)  IEA  
Protein XP_042916083.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  chlo_mito 3  (predict for XP_042916083.1)
Subcellular
localization
TargetP
mito 7,  other 3  (predict for XP_042916083.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g676650v5

.
ath-u.5
for
GAMMA-ADAPTIN 1

.
ath-u.5
for
AT1G60070

.
gma-u.5
for
100802164

.
gma-u.5
for
100817075

.
gma-u.5
for
100815152

.
sly-u.5
for
101262006

.
sly-u.5
for
101256586

.
osa-u.5
for
4331060

.
osa-u.5
for
4340249

.
zma-u.5
for
100193027

.
zma-u.5
for
100381886

.
zma-u.5
for
100501945

.
vvi-u.5
for
100241508

.
ppo-u.5
for
7468838

.
ppo-u.5
for
7454966

.
mtr-u.5
for
25501281

.
mtr-u.5
for
11411112

.


Ortholog ID: 3748
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT1G60070 GAMMA-ADAPTIN 1 LOC100815152 LOC100802164 LOC101256586 LOC101262006 LOC4340249 LOC4331060 LOC100193027 LOC100501945 LOC103829252 LOC103840720 LOC100241508 LOC7468838 LOC7454966 LOC25501281 LOC11411112 LOC123146015 LOC123128870 LOC123407263 LOC123406266 LOC107909653 LOC107901981 LOC106358107 LOC106367581 CHLRE_16g676650v5 LOC110431058 LOC8084666 LOC102584677 LOC102585295 LOC102628648 LOC100833599 LOC100842707 LOC107773525 LOC107790516
Function* Adaptor protein complex AP-1, gamma subunit gamma-adaptin 1 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2-like AP-1 complex subunit gamma-2-like AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-1 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-1 AP-1 complex subunit gamma-1 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2-like AP-1 complex subunit gamma-2-like AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-1-like AP-1 complex subunit gamma-1 uncharacterized protein AP-1 complex subunit gamma-2-like AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2-like AP-1 complex subunit gamma-2-like AP-1 complex subunit gamma-2-like AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2 AP-1 complex subunit gamma-2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 4
ath04144 Endocytosis 3
ath00100 Steroid biosynthesis 2
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
ath04148 Efferocytosis 4
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 4
gma04142 Lysosome 4
gma00190 Oxidative phosphorylation 2
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 6
sly04144 Endocytosis 5
sly05100 Bacterial invasion of epithelial cells 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 4
sly04144 Endocytosis 3
sly05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04142 Lysosome 3
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04142 Lysosome 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 3
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 3
zma04144 Endocytosis 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 10
bra04142 Lysosome 6
bra05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 4
bra04144 Endocytosis 4
bra05100 Bacterial invasion of epithelial cells 3
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 4
vvi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 4
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03013 Nucleocytoplasmic transport 2
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 4
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04144 Endocytosis 2
mtr05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 3
mtr04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 4
hvu05100 Bacterial invasion of epithelial cells 2
hvu04142 Lysosome 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 8
ghi04144 Endocytosis 2
ghi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 6
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 4
bna04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 4
bna04144 Endocytosis 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04142 Lysosome 7
cre04144 Endocytosis 4
cre00190 Oxidative phosphorylation 2
cre04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00240 Pyrimidine metabolism 2
sbi01232 Nucleotide metabolism 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 6
sot04144 Endocytosis 6
sot05100 Bacterial invasion of epithelial cells 4
sot04141 Protein processing in endoplasmic reticulum 3
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit04142 Lysosome 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 4
bdi04144 Endocytosis 3
bdi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 6
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
nta03015 mRNA surveillance pathway 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 6
nta03015 mRNA surveillance pathway 4
nta04382 Cornified envelope formation 4
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842301 839001 100815152 100802164 101256586 101262006 4340249 4331060 100193027 100501945 103829252 103840720 100241508 7468838 7454966 25501281 11411112 123146015 123128870 123407263 123406266 107909653 107901981 106358107 106367581 5721486 110431058 8084666 102584677 102585295 102628648 100833599 100842707 107773525 107790516
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