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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_08g366400v5   uncharacterized protein 
 ath-u.5   RAD23C   Rad23 UV excision repair protein family 
 ath-u.5   RAD23D   Rad23 UV excision repair protein family 
 ath-u.5   RAD23A   Rad23 UV excision repair protein family 
 gma-u.5   100814162   ubiquitin receptor RAD23c 
 gma-u.5   100819019   putative DNA repair protein RAD23-1-like 
 gma-u.5   100818012   ubiquitin receptor RAD23c 
 sly-u.5   101251966   ubiquitin receptor RAD23b 
 sly-u.5   101258124   ubiquitin receptor RAD23c 
 sly-u.5   RAD23d   ubiquitin receptor RAD23d 
 osa-u.5   4347014   probable ubiquitin receptor RAD23 
 osa-u.5   4345632   probable ubiquitin receptor RAD23 
 osa-u.5   4340699   ubiquitin receptor RAD23d 
 zma-u.5   100283179   uncharacterized LOC100283179 
 zma-u.5   100282762   uncharacterized LOC100282762 
 zma-u.5   100282427   uncharacterized LOC100282427 
 vvi-u.5   100267246   ubiquitin receptor RAD23b 
 vvi-u.5   100245820   ubiquitin receptor RAD23c 
 vvi-u.5   100244610   ubiquitin receptor RAD23c 
 ppo-u.5   18099502   ubiquitin receptor RAD23c 
 ppo-u.5   7476798   ubiquitin receptor RAD23b 
 ppo-u.5   7488352   ubiquitin receptor RAD23d 
 mtr-u.5   25499820   ubiquitin receptor RAD23d 
 mtr-u.5   25485511   ubiquitin receptor RAD23c 
 mtr-u.5   25488002   ubiquitin receptor RAD23b 

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Top 50 coexpressed genes to CHLRE_08g366400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_08g366400v5 (cre-r.1 coexpression data)

CoexMap"5721666"


creCHLRE_08g366400v5 | Entrez gene ID : 5721666      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03420 [list] [network] Nucleotide excision repair (42 genes)
cre04141 [list] [network] Protein processing in endoplasmic reticulum (76 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (28 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (98 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (152 genes)  IEA  
GO:0005829 [list] [network] cytosol  (481 genes)  IEA  
GO MF
GO:0070628 [list] [network] proteasome binding  (6 genes)  IEA  
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (12 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (27 genes)  IEA  
GO:0043130 [list] [network] ubiquitin binding  (51 genes)  IEA  
Protein XP_042921938.1 [sequence] [blastp]
XP_042921939.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 2,  mito 2  (predict for XP_042921938.1)
chlo 5,  cyto 2,  mito 2  (predict for XP_042921939.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042921938.1)
other 8  (predict for XP_042921939.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_08g366400v5

.
ath-u.5
for
RAD23C

.
ath-u.5
for
RAD23D

.
ath-u.5
for
RAD23A

.
gma-u.5
for
100814162

.
gma-u.5
for
100819019

.
gma-u.5
for
100818012

.
sly-u.5
for
101251966

.
sly-u.5
for
101258124

.
sly-u.5
for
RAD23d

.
osa-u.5
for
4347014

.
osa-u.5
for
4345632

.
osa-u.5
for
4340699

.
zma-u.5
for
100283179

.
zma-u.5
for
100282762

.
zma-u.5
for
100282427

.
vvi-u.5
for
100267246

.
vvi-u.5
for
100245820

.
vvi-u.5
for
100244610

.
ppo-u.5
for
18099502

.
ppo-u.5
for
7476798

.
ppo-u.5
for
7488352

.
mtr-u.5
for
25499820

.
mtr-u.5
for
25485511

.
mtr-u.5
for
25488002

.


Ortholog ID: 748
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RAD23B RAD23D LOC100813881 LOC100819019 RAD23d LOC101251966 LOC4345632 LOC4328500 LOC100283179 LOC100274222 LOC103858967 LOC103842858 LOC100245820 LOC100244610 LOC18099502 LOC7476798 LOC25488002 LOC112418701 LOC123136563 LOC123121483 LOC123396360 LOC123407404 LOC107891755 LOC107913821 LOC106429448 LOC106352651 CHLRE_08g366400v5 LOC110430980 LOC8079399 LOC102577665 LOC102604588 LOC102620700 LOC102614644 LOC100838271 LOC100830156 LOC107796487 LOC107783697
Function* Rad23 UV excision repair protein family Rad23 UV excision repair protein family ubiquitin receptor RAD23c-like putative DNA repair protein RAD23-1-like ubiquitin receptor RAD23d ubiquitin receptor RAD23b probable ubiquitin receptor RAD23 ubiquitin receptor RAD23b uncharacterized LOC100283179 DNA repair protein RAD23 ubiquitin receptor RAD23c probable ubiquitin receptor RAD23a ubiquitin receptor RAD23c ubiquitin receptor RAD23c ubiquitin receptor RAD23c ubiquitin receptor RAD23b ubiquitin receptor RAD23b ubiquitin receptor RAD23b ubiquitin receptor RAD23b probable ubiquitin receptor RAD23 probable ubiquitin receptor RAD23 ubiquitin receptor RAD23d-like ubiquitin receptor RAD23b ubiquitin receptor RAD23b ubiquitin receptor RAD23d ubiquitin receptor RAD23d uncharacterized protein ubiquitin receptor RAD23d-like ubiquitin receptor RAD23b uncharacterized LOC102577665 ubiquitin receptor RAD23d ubiquitin receptor RAD23b ubiquitin receptor RAD23c-like ubiquitin receptor RAD23d probable ubiquitin receptor RAD23 ubiquitin receptor RAD23d ubiquitin receptor RAD23d
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath04141 Protein processing in endoplasmic reticulum 3
ath04382 Cornified envelope formation 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 11
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma04141 Protein processing in endoplasmic reticulum 5
gma03420 Nucleotide excision repair 4
gma00030 Pentose phosphate pathway 2
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly04141 Protein processing in endoplasmic reticulum 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa03420 Nucleotide excision repair 3
osa03410 Base excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 11
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo04144 Endocytosis 3
ppo03083 Polycomb repressive complex 3
ppo04120 Ubiquitin mediated proteolysis 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03420 Nucleotide excision repair 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
mtr03010 Ribosome 3
mtr03420 Nucleotide excision repair 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03420 Nucleotide excision repair 3
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 11
tae03420 Nucleotide excision repair 3
tae04141 Protein processing in endoplasmic reticulum 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
hvu03013 Nucleocytoplasmic transport 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi00030 Pentose phosphate pathway 2
ghi00230 Purine metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi00030 Pentose phosphate pathway 2
ghi00230 Purine metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 4
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 4
bna04141 Protein processing in endoplasmic reticulum 4
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 13
cre04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 7
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03420 Nucleotide excision repair 2
sot04141 Protein processing in endoplasmic reticulum 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit00970 Aminoacyl-tRNA biosynthesis 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03008 Ribosome biogenesis in eukaryotes 2
cit04712 Circadian rhythm - plant 2
cit03015 mRNA surveillance pathway 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 4
nta04070 Phosphatidylinositol signaling system 4
nta04075 Plant hormone signal transduction 4
nta04626 Plant-pathogen interaction 4
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844304 833835 100813881 100819019 101246007 101251966 4345632 4328500 100283179 100274222 103858967 103842858 100245820 100244610 18099502 7476798 25488002 112418701 123136563 123121483 123396360 123407404 107891755 107913821 106429448 106352651 5721666 110430980 8079399 102577665 102604588 102620700 102614644 100838271 100830156 107796487 107783697
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