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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g003487v5   uncharacterized protein 
 ath-u.5   AT1G31870   pre-mRNA-splicing factor of RES complex protein 
 gma-u.5   100783213   BUD13 homolog 
 sly-u.5   101250965   uncharacterized LOC101250965 
 osa-u.5   4344809   uncharacterized LOC4344809 
 zma-u.5   100280266   uncharacterized LOC100280266 
 vvi-u.5   100245538   uncharacterized LOC100245538 
 ppo-u.5   18096927   uncharacterized LOC18096927 
 mtr-u.5   25502435   BUD13 homolog 
 mtr-u.5   25500876   BUD13 homolog 

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Top 50 coexpressed genes to CHLRE_01g003487v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g003487v5 (cre-r.1 coexpression data)

CoexMap"5721676"


creCHLRE_01g003487v5 | Entrez gene ID : 5721676    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0070274 [list] [network] RES complex  (1 genes)  IEA  
GO:0005684 [list] [network] U2-type spliceosomal complex  (36 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042928059.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_042928059.1)
Subcellular
localization
TargetP
other 5  (predict for XP_042928059.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g003487v5

.
ath-u.5
for
AT1G31870

.
gma-u.5
for
100783213

.
sly-u.5
for
101250965

.
osa-u.5
for
4344809

.
zma-u.5
for
100280266

.
vvi-u.5
for
100245538

.
ppo-u.5
for
18096927

.
mtr-u.5
for
25502435

.
mtr-u.5
for
25500876

.


Ortholog ID: 9244
Species ath gma sly osa zma bra vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G31870 LOC100783213 LOC101250965 LOC4344809 LOC100280266 LOC103868925 LOC100245538 LOC18096927 LOC25500876 LOC25502435 LOC123154227 LOC123165324 LOC123398483 LOC123407739 LOC107897382 LOC107887821 LOC106451799 LOC106365612 CHLRE_01g003487v5 LOC8068410 LOC102597053 LOC102619914 LOC100835445 LOC107820443 LOC107820758
Function* pre-mRNA-splicing factor of RES complex protein BUD13 homolog uncharacterized LOC101250965 uncharacterized LOC4344809 uncharacterized LOC100280266 BUD13 homolog uncharacterized LOC100245538 uncharacterized LOC18096927 BUD13 homolog BUD13 homolog BUD13 homolog BUD13 homolog uncharacterized LOC123398483 BUD13 homolog BUD13 homolog BUD13 homolog BUD13 homolog BUD13 homolog uncharacterized protein BUD13 homolog BUD13 homolog uncharacterized LOC102619914 BUD13 homolog uncharacterized LOC107820443 uncharacterized LOC107820758
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03008 Ribosome biogenesis in eukaryotes 3
sly03015 mRNA surveillance pathway 2
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03440 Homologous recombination 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840077 100783213 101250965 4344809 100280266 103868925 100245538 18096927 25500876 25502435 123154227 123165324 123398483 123407739 107897382 107887821 106451799 106365612 5721676 8068410 102597053 102619914 100835445 107820443 107820758
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