Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g264500v5   uncharacterized protein 
 ath-u.5   AT3G56510   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100782763   pre-rRNA-processing protein ESF2-like 
 gma-u.5   100798524   pre-rRNA-processing protein ESF2 
 sly-u.5   101268320   pre-rRNA-processing protein ESF2 
 sly-u.5   101251521   pre-rRNA-processing protein ESF2 
 osa-u.5   4344189   pre-rRNA-processing protein ESF2 
 zma-u.5   100192645   activator of basal transcription 1 
 vvi-u.5   100259435   pre-rRNA-processing protein ESF2 
 mtr-u.5   11416006   pre-rRNA-processing protein esf2 

close


Top 50 coexpressed genes to CHLRE_06g264500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CHLRE_06g264500v5 (cre-r.1 coexpression data)

CoexMap"5721974"


creCHLRE_06g264500v5 | Entrez gene ID : 5721974    
Species cre ath gma sly osa zma vvi mtr ppo hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034462 [list] [network] small-subunit processome assembly  (1 genes)  IEA  
GO:0000472 [list] [network] endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (3 genes)  IEA  
GO:0000480 [list] [network] endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (3 genes)  IEA  
GO:0000447 [list] [network] endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (6 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001696560.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  mito 1  (predict for XP_001696560.2)
Subcellular
localization
TargetP
mito 7  (predict for XP_001696560.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g264500v5

.
ath-u.5
for
AT3G56510

.
gma-u.5
for
100782763

.
gma-u.5
for
100798524

.
sly-u.5
for
101268320

.
sly-u.5
for
101251521

.
osa-u.5
for
4344189

.
zma-u.5
for
100192645

.
vvi-u.5
for
100259435

.
mtr-u.5
for
11416006

.


Ortholog ID: 6291
Species ath gma gma sly sly osa zma bra vvi mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol AT3G56510 LOC100798524 LOC100782763 LOC101268320 LOC101251521 LOC4344189 LOC100192645 LOC103841555 LOC100259435 LOC11416006 LOC123066924 LOC123048815 LOC123424845 LOC107926354 LOC107926517 LOC106368079 LOC106367985 CHLRE_06g264500v5 LOC8073146 LOC102589194 LOC102591887 LOC127900427 LOC102607508 LOC100846888 LOC107794512 LOC107779934
Function* RNA-binding (RRM/RBD/RNP motifs) family protein pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 activator of basal transcription 1 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein esf2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2 uncharacterized protein pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein esf2 pre-rRNA-processing protein ESF2 pre-rRNA-processing protein ESF2-like pre-rRNA-processing protein esf2
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824818 100798524 100782763 101268320 101251521 4344189 100192645 103841555 100259435 11416006 123066924 123048815 123424845 107926354 107926517 106368079 106367985 5721974 8073146 102589194 102591887 127900427 102607508 100846888 107794512 107779934
The preparation time of this page was 0.1 [sec].