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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g414350v5   uncharacterized protein 
 ath-u.5   SYN2   Rad21/Rec8-like family protein 
 gma-u.5   100810733   sister chromatid cohesion 1 protein 2 
 sly-u.5   101264090   sister chromatid cohesion 1 protein 2 
 osa-u.5   4336225   sister chromatid cohesion 1 protein 2 
 zma-u.5   103641790   sister chromatid cohesion 1 protein 2 
 vvi-u.5   100257596   sister chromatid cohesion 1 protein 2 
 ppo-u.5   18107254   sister chromatid cohesion 1 protein 2 
 mtr-u.5   11446895   sister chromatid cohesion 1 protein 2 

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Top 50 coexpressed genes to CHLRE_09g414350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g414350v5 (cre-r.1 coexpression data)

CoexMap"5722347"


creCHLRE_09g414350v5 | Entrez gene ID : 5722347    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007130 [list] [network] synaptonemal complex assembly  (4 genes)  IEA  
GO:1990414 [list] [network] replication-born double-strand break repair via sister chromatid exchange  (6 genes)  IEA  
GO:0007064 [list] [network] mitotic sister chromatid cohesion  (15 genes)  IEA  
GO CC
GO:0000795 [list] [network] synaptonemal complex  (4 genes)  IEA  
GO:0008278 [list] [network] cohesin complex  (7 genes)  IEA  
GO MF
GO:0003682 [list] [network] chromatin binding  (81 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042921643.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 5,  cyto 3,  extr 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_042921643.1)
Subcellular
localization
TargetP
mito 5  (predict for XP_042921643.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g414350v5

.
ath-u.5
for
SYN2

.
gma-u.5
for
100810733

.
sly-u.5
for
101264090

.
osa-u.5
for
4336225

.
zma-u.5
for
103641790

.
vvi-u.5
for
100257596

.
ppo-u.5
for
18107254

.
mtr-u.5
for
11446895

.


Ortholog ID: 9710
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SYN2 LOC100810733 LOC101264090 LOC4336225 LOC103641790 LOC103864028 LOC100257596 LOC18107254 LOC11446895 LOC123189591 LOC123053718 LOC123427071 LOC107914082 LOC107944846 LOC111205384 LOC106402700 CHLRE_09g414350v5 LOC8060176 LOC102599094 LOC102620607 LOC100843631 LOC107770136 LOC107798511
Function* Rad21/Rec8-like family protein sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2-like sister chromatid cohesion 1 protein 2-like sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 uncharacterized protein uncharacterized LOC8060176 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 4 sister chromatid cohesion 1 protein 2 sister chromatid cohesion 1 protein 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 4
ath03440 Homologous recombination 3
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 2
sly03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 4
bra03410 Base excision repair 3
bra03030 DNA replication 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 5
tae03020 RNA polymerase 4
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03450 Non-homologous end-joining 4
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03450 Non-homologous end-joining 4
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna00240 Pyrimidine metabolism 4
bna00480 Glutathione metabolism 4
bna01232 Nucleotide metabolism 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03430 Mismatch repair 4
bdi03460 Fanconi anemia pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834084 100810733 101264090 4336225 103641790 103864028 100257596 18107254 11446895 123189591 123053718 123427071 107914082 107944846 111205384 106402700 5722347 8060176 102599094 102620607 100843631 107770136 107798511
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