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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g517700v5   uncharacterized protein 
 ath-u.5   NYC1   NAD(P)-binding Rossmann-fold superfamily protein 
 gma-u.5   NYC1_2   protein NON-YELLOW COLORING 1 
 gma-u.5   NYC1_1   protein NON-YELLOW COLORING 1 
 sly-u.5   101258872   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 osa-u.5   4327178   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 zma-u.5   103649763   uncharacterized LOC103649763 
 zma-u.5   100281115   uncharacterized LOC100281115 
 bra-r.6   103863639   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 bra-r.6   103833353   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 vvi-u.5   100259397   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 ppo-u.5   7458766   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 mtr-u.5   11442626   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 tae-r.2   123077855   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 tae-r.2   123069340   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 hvu-r.1   123443233   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 ghi-r.1   107958763   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 ghi-r.1   107907214   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 bna-r.1   106415430   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 bna-r.1   106368659   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 bna-r.1   106423622   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 sbi-r.1   8081366   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 sot-r.1   102601206   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 cit-r.1   102617189   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 bdi-r.1   100842430   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 nta-r.1   107819263   probable chlorophyll(ide) b reductase NYC1, chloroplastic 
 nta-r.1   107825949   putative chlorophyll(ide) b reductase NYC1, chloroplastic 

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Top 50 coexpressed genes to CHLRE_12g517700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g517700v5 (cre-r.1 coexpression data)

CoexMap"5722636"


creCHLRE_12g517700v5 | Entrez gene ID : 5722636      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 2 2 1 1 1 2 1 2 3 1 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00860 [list] [network] Porphyrin metabolism (50 genes)
GO BP
GO:0010304 [list] [network] PSII associated light-harvesting complex II catabolic process  (1 genes)  IEA  
GO:0015996 [list] [network] chlorophyll catabolic process  (6 genes)  IEA  
GO CC
GO MF
GO:0034256 [list] [network] chlorophyll(ide) b reductase activity  (1 genes)  IEA  
Protein XP_001697080.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  plas 2,  pero 2,  chlo 1,  nucl 1,  mito 1,  vacu 1,  chlo_mito 1  (predict for XP_001697080.2)
Subcellular
localization
TargetP
other 8  (predict for XP_001697080.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g517700v5
ath-u.5
for
NYC1
gma-u.5
for
NYC1_2
gma-u.5
for
NYC1_1
sly-u.5
for
101258872
osa-u.5
for
4327178
zma-u.5
for
103649763
zma-u.5
for
100281115
bra-r.6
for
103863639
bra-r.6
for
103833353
vvi-u.5
for
100259397
ppo-u.5
for
7458766
mtr-u.5
for
11442626
tae-r.2
for
123077855
tae-r.2
for
123069340
hvu-r.1
for
123443233
ghi-r.1
for
107958763
ghi-r.1
for
107907214
bna-r.1
for
106415430
bna-r.1
for
106368659
bna-r.1
for
106423622
sbi-r.1
for
8081366
sot-r.1
for
102601206
cit-r.1
for
102617189
bdi-r.1
for
100842430
nta-r.1
for
107819263
nta-r.1
for
107825949


Ortholog ID: 8533
Species cre ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g517700v5 NYC1 NYC1_2 NYC1_1 LOC101258872 LOC4327178 LOC103649763 LOC100281115 LOC103863639 LOC103833353 LOC100259397 LOC7458766 LOC11442626 LOC123077855 LOC123069340 LOC123443233 LOC107958763 LOC107907214 LOC106415430 LOC106423622 LOC106445844 LOC8081366 LOC102601206 LOC102617189 LOC100842430 LOC107819263 LOC107825949
Function* uncharacterized protein NAD(P)-binding Rossmann-fold superfamily protein protein NON-YELLOW COLORING 1 protein NON-YELLOW COLORING 1 probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic uncharacterized LOC103649763 uncharacterized LOC100281115 probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic probable chlorophyll(ide) b reductase NYC1, chloroplastic putative chlorophyll(ide) b reductase NYC1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 5
ath00860 Porphyrin metabolism 3
ath00630 Glyoxylate and dicarboxylate metabolism 3
ath04146 Peroxisome 3
ath00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 6
gma01240 Biosynthesis of cofactors 3
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
bra00230 Purine metabolism 2
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 3
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 5
mtr00906 Carotenoid biosynthesis 3
mtr04082 Neuroactive ligand signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae04070 Phosphatidylinositol signaling system 3
tae00860 Porphyrin metabolism 2
tae00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 5
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 5
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 5
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 5
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit04075 Plant hormone signal transduction 2
cit00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 4
bdi00190 Oxidative phosphorylation 3
bdi00020 Citrate cycle (TCA cycle) 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5722636 826942 100797007 100784978 101258872 4327178 103649763 100281115 103863639 103833353 100259397 7458766 11442626 123077855 123069340 123443233 107958763 107907214 106415430 106423622 106445844 8081366 102601206 102617189 100842430 107819263 107825949
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