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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g720750v5   uncharacterized protein 
 ath-u.5   AT5G53770   Nucleotidyltransferase family protein 
 gma-u.5   100811320   terminal nucleotidyltransferase 4A 
 sly-u.5   101268034   nucleotidyltransferase family protein 
 osa-u.5   4325901   uncharacterized LOC4325901 
 zma-u.5   103651371   terminal nucleotidyltransferase 4B 
 vvi-u.5   100259006   uncharacterized LOC100259006 
 ppo-u.5   18095590   uncharacterized LOC18095590 
 mtr-u.5   25487346   terminal nucleotidyltransferase 4A 

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Top 50 coexpressed genes to CHLRE_17g720750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g720750v5 (cre-r.1 coexpression data)

CoexMap"5722682"


creCHLRE_17g720750v5 | Entrez gene ID : 5722682      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03018 [list] [network] RNA degradation (48 genes)
GO BP
GO:0031123 [list] [network] RNA 3'-end processing  (40 genes)  IEA  
GO CC
GO:0031499 [list] [network] TRAMP complex  (4 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:1990817 [list] [network] poly(A) RNA polymerase activity  (5 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
Protein XP_042914714.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 2,  vacu 2  (predict for XP_042914714.1)
Subcellular
localization
TargetP
other 3  (predict for XP_042914714.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g720750v5

.
ath-u.5
for
AT5G53770

.
gma-u.5
for
100811320

.
sly-u.5
for
101268034

.
osa-u.5
for
4325901

.
zma-u.5
for
103651371

.
vvi-u.5
for
100259006

.
ppo-u.5
for
18095590

.
mtr-u.5
for
25487346

.


Ortholog ID: 10393
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT5G53770 LOC100811320 LOC101268034 LOC4325901 LOC103651371 LOC103844845 LOC100259006 LOC18095590 LOC25487346 LOC123079011 LOC123070604 LOC123444076 LOC107918027 LOC107952110 LOC106371278 LOC106417366 CHLRE_17g720750v5 LOC8067999 LOC102596617 LOC127899945 LOC102623093 LOC100828283 LOC107822004 LOC107817449
Function* Nucleotidyltransferase family protein terminal nucleotidyltransferase 4A nucleotidyltransferase family protein uncharacterized LOC4325901 terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B uncharacterized LOC100259006 uncharacterized LOC18095590 terminal nucleotidyltransferase 4A terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4A terminal nucleotidyltransferase 4A terminal nucleotidyltransferase 4B-like terminal nucleotidyltransferase 4B uncharacterized protein non-canonical poly(A) RNA polymerase PAPD5 non-canonical poly(A) RNA polymerase PAPD5 poly(A) RNA polymerase protein 2-like uncharacterized LOC102623093 non-canonical poly(A) RNA polymerase PAPD5 uncharacterized LOC107822004 uncharacterized LOC107817449
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly03040 Spliceosome 2
sly03008 Ribosome biogenesis in eukaryotes 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae00030 Pentose phosphate pathway 3
tae00230 Purine metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi00770 Pantothenate and CoA biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835458 100811320 101268034 4325901 103651371 103844845 100259006 18095590 25487346 123079011 123070604 123444076 107918027 107952110 106371278 106417366 5722682 8067999 102596617 127899945 102623093 100828283 107822004 107817449
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