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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g726100v5   uncharacterized protein 
 ath-u.5   AT1G22660   Polynucleotide adenylyltransferase family protein 
 gma-u.5   100792514   tRNA nucleotidyltransferase cca2 
 gma-u.5   100527248   polynucleotide adenylyltransferase family protein 
 sly-u.5   101245020   tRNA nucleotidyltransferase cca2-like 
 sly-u.5   101243854   tRNA nucleotidyltransferase cca2 
 osa-u.5   4351629   tRNA nucleotidyltransferase cca2 
 zma-u.5   103640843   putative CCA tRNA nucleotidyltransferase 2 
 vvi-u.5   100257606   tRNA nucleotidyltransferase cca2 
 ppo-u.5   18104442   tRNA nucleotidyltransferase cca2 
 mtr-u.5   25484987   tRNA nucleotidyltransferase cca2 
 mtr-u.5   25484991   tRNA nucleotidyltransferase cca2 

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Top 50 coexpressed genes to CHLRE_17g726100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g726100v5 (cre-r.1 coexpression data)

CoexMap"5722784"


creCHLRE_17g726100v5 | Entrez gene ID : 5722784      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001680 [list] [network] tRNA 3'-terminal CCA addition  (2 genes)  IEA  
GO CC
GO MF
GO:0052929 [list] [network] ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity  (2 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001697252.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for XP_001697252.2)
Subcellular
localization
TargetP
mito 5,  chlo 4  (predict for XP_001697252.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g726100v5

.
ath-u.5
for
AT1G22660

.
gma-u.5
for
100792514

.
gma-u.5
for
100527248

.
sly-u.5
for
101245020

.
sly-u.5
for
101243854

.
osa-u.5
for
4351629

.
zma-u.5
for
103640843

.
vvi-u.5
for
100257606

.
ppo-u.5
for
18104442

.
mtr-u.5
for
25484987

.
mtr-u.5
for
25484991

.


Ortholog ID: 6710
Species ath gma gma sly sly osa zma bra bra vvi ppo mtr mtr hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G22660 LOC100527248 LOC100792514 LOC101245020 LOC101243854 LOC4351629 LOC103640843 LOC103829316 LOC103840838 LOC100257606 LOC18104442 LOC25484987 LOC25484991 LOC123396517 LOC107914040 LOC107959536 LOC106411090 LOC106429808 CHLRE_17g726100v5 LOC110429780 LOC102601333 LOC102621272 LOC100823932 LOC107784829 LOC107803792
Function* Polynucleotide adenylyltransferase family protein polynucleotide adenylyltransferase family protein tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2-like tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 putative CCA tRNA nucleotidyltransferase 2 CCA tRNA nucleotidyltransferase, mitochondrial tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 CCA tRNA nucleotidyltransferase, mitochondrial tRNA nucleotidyltransferase cca2 uncharacterized protein putative CCA tRNA nucleotidyltransferase 2 putative CCA tRNA nucleotidyltransferase 2 tRNA nucleotidyltransferase cca2 putative CCA tRNA nucleotidyltransferase 2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03018 RNA degradation 2
ath00970 Aminoacyl-tRNA biosynthesis 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma00760 Nicotinate and nicotinamide metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi03018 RNA degradation 2
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03013 Nucleocytoplasmic transport 2
ghi03250 Viral life cycle - HIV-1 2
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 8
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03250 Viral life cycle - HIV-1 6
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838872 100527248 100792514 101245020 101243854 4351629 103640843 103829316 103840838 100257606 18104442 25484987 25484991 123396517 107914040 107959536 106411090 106429808 5722784 110429780 102601333 102621272 100823932 107784829 107803792
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