ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_03g157300v5	uncharacterized protein
ath-u.5	AT2G32070	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
ath-u.5	AT5G10960	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
ath-u.5	AT1G80780	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
gma-u.5	100798365	probable CCR4-associated factor 1 homolog 7
gma-u.5	100799461	probable CCR4-associated factor 1 homolog 7
gma-u.5	100789409	probable CCR4-associated factor 1 homolog 7
sly-u.5	101256741	probable CCR4-associated factor 1 homolog 7
sly-u.5	101258664	probable CCR4-associated factor 1 homolog 6
sly-u.5	101244756	probable CCR4-associated factor 1 homolog 7
osa-u.5	4331006	probable CCR4-associated factor 1 homolog 7
osa-u.5	4347066	probable CCR4-associated factor 1 homolog 7
zma-u.5	100282279	CCR4-NOT transcription complex subunit 7
zma-u.5	100216888	uncharacterized LOC100216888
zma-u.5	100193739	CCR4-NOT transcription complex subunit 7
bra-r.6	103867670	probable CCR4-associated factor 1 homolog 7
bra-r.6	103855893	probable CCR4-associated factor 1 homolog 10
bra-r.6	103853216	probable CCR4-associated factor 1 homolog 6
vvi-u.5	100255985	probable CCR4-associated factor 1 homolog 7
vvi-u.5	100250028	probable CCR4-associated factor 1 homolog 7
vvi-u.5	100248407	probable CCR4-associated factor 1 homolog 7
ppo-u.5	7458412	probable CCR4-associated factor 1 homolog 6
ppo-u.5	18094535	probable CCR4-associated factor 1 homolog 6
ppo-u.5	7455670	probable CCR4-associated factor 1 homolog 7
mtr-u.5	112420417	probable CCR4-associated factor 1 homolog 7
mtr-u.5	112421400	probable CCR4-associated factor 1 homolog 7
tae-r.2	123139130	probable CCR4-associated factor 1 homolog 7
tae-r.2	123145910	probable CCR4-associated factor 1 homolog 7
tae-r.2	123112105	probable CCR4-associated factor 1 homolog 7
hvu-r.1	123398198	probable CCR4-associated factor 1 homolog 7
hvu-r.1	123401958	probable CCR4-associated factor 1 homolog 7
ghi-r.1	107893466	probable CCR4-associated factor 1 homolog 7
ghi-r.1	107901685	probable CCR4-associated factor 1 homolog 6
ghi-r.1	107906843	probable CCR4-associated factor 1 homolog 7
bna-r.1	111198017	probable CCR4-associated factor 1 homolog 10
bna-r.1	106381560	probable CCR4-associated factor 1 homolog 6
bna-r.1	106396867	probable CCR4-associated factor 1 homolog 7
sbi-r.1	8060251	probable CCR4-associated factor 1 homolog 7
sbi-r.1	8056387	probable CCR4-associated factor 1 homolog 7
sot-r.1	102595031	probable CCR4-associated factor 1 homolog 7
sot-r.1	102598567	probable CCR4-associated factor 1 homolog 7
sot-r.1	102605889	probable CCR4-associated factor 1 homolog 6
cit-r.1	102622681	probable CCR4-associated factor 1 homolog 7
cit-r.1	102626974	probable CCR4-associated factor 1 homolog 6
cit-r.1	102628865	probable CCR4-associated factor 1 homolog 6
bdi-r.1	100828698	probable CCR4-associated factor 1 homolog 7
bdi-r.1	100838839	probable CCR4-associated factor 1 homolog 7
nta-r.1	107818443	putative CCR4-associated factor 1 homolog 6
nta-r.1	107761776	putative CCR4-associated factor 1 homolog 6
nta-r.1	107826326	putative CCR4-associated factor 1 homolog 7

Top 50 coexpressed genes to CHLRE_03g157300v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_03g157300v5 (cre-r.1 coexpression data)

CoexMap"5723043"

[Cytoscape]

Annotation

functional annotation

KEGG

cre03018 [list] [network] RNA degradation (48 genes)

GO BP

GO CC

GO:0030015 [list] [network] CCR4-NOT core complex	(6 genes)	IEA
GO:0030014 [list] [network] CCR4-NOT complex	(14 genes)	IEA
GO:0000932 [list] [network] P-body	(23 genes)	IEA

GO MF

GO:0004535 [list] [network] poly(A)-specific ribonuclease activity	(6 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(1484 genes)	IEA

Protein

XP_001697447.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, cyto_E.R. 3, cysk 2

(predict for XP_001697447.2)

Subcellular
localization
TargetP

other 8, scret 3

(predict for XP_001697447.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_03g157300v5	ath-u.5 for AT2G32070	ath-u.5 for AT5G10960	ath-u.5 for AT1G80780	gma-u.5 for 100798365	gma-u.5 for 100799461	gma-u.5 for 100789409	sly-u.5 for 101256741	sly-u.5 for 101258664	sly-u.5 for 101244756	osa-u.5 for 4331006	osa-u.5 for 4347066	zma-u.5 for 100282279	zma-u.5 for 100216888	zma-u.5 for 100193739	bra-r.6 for 103867670	bra-r.6 for 103855893	bra-r.6 for 103853216	vvi-u.5 for 100255985	vvi-u.5 for 100250028	vvi-u.5 for 100248407	ppo-u.5 for 7458412	ppo-u.5 for 18094535	ppo-u.5 for 7455670	mtr-u.5 for 112420417	mtr-u.5 for 112421400	tae-r.2 for 123139130	tae-r.2 for 123145910	tae-r.2 for 123112105	hvu-r.1 for 123398198	hvu-r.1 for 123401958	ghi-r.1 for 107893466	ghi-r.1 for 107901685	ghi-r.1 for 107906843	bna-r.1 for 111198017	bna-r.1 for 106381560	bna-r.1 for 106396867	sbi-r.1 for 8060251	sbi-r.1 for 8056387	sot-r.1 for 102595031	sot-r.1 for 102598567	sot-r.1 for 102605889	cit-r.1 for 102622681	cit-r.1 for 102626974	cit-r.1 for 102628865	bdi-r.1 for 100828698	bdi-r.1 for 100838839	nta-r.1 for 107818443	nta-r.1 for 107761776	nta-r.1 for 107826326

Ortholog

Ortholog ID: 1534

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Polynucleotidyl transferase, ribonuclease H-like superfamily protein