Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_05g238950v5   uncharacterized protein 
 ath-u.5   AT4G15520   tRNA/rRNA methyltransferase (SpoU) family protein 
 gma-u.5   100305780   uncharacterized LOC100305780 
 sly-u.5   101267645   uncharacterized LOC101267645 
 osa-u.5   4337763   uncharacterized LOC4337763 
 zma-u.5   100285504   uncharacterized LOC100285504 
 vvi-u.5   100252797   uncharacterized LOC100252797 
 ppo-u.5   7469097   uncharacterized LOC7469097 
 mtr-u.5   11408462   putative TrmH family tRNA/rRNA methyltransferase 

close


Top 50 coexpressed genes to CHLRE_05g238950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CHLRE_05g238950v5 (cre-r.1 coexpression data)

CoexMap"5723334"


creCHLRE_05g238950v5 | Entrez gene ID : 5723334      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006396 [list] [network] RNA processing  (507 genes)  IEA  
GO CC
GO MF
GO:0008173 [list] [network] RNA methyltransferase activity  (41 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001697715.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  plas 2,  extr 1,  vacu 1,  chlo_mito 1,  nucl_plas 1,  E.R._plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_001697715.2)
Subcellular
localization
TargetP
chlo 7,  other 5  (predict for XP_001697715.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_05g238950v5

.
ath-u.5
for
AT4G15520

.
gma-u.5
for
100305780

.
sly-u.5
for
101267645

.
osa-u.5
for
4337763

.
zma-u.5
for
100285504

.
vvi-u.5
for
100252797

.
ppo-u.5
for
7469097

.
mtr-u.5
for
11408462

.


Ortholog ID: 9579
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G15520 LOC100305780 LOC101267645 LOC4337763 LOC100285504 LOC103860786 LOC103870822 LOC100252797 LOC7469097 LOC11408462 LOC123180375 LOC123111037 LOC123424361 LOC107897655 LOC107915084 LOC106380630 LOC106440039 CHLRE_05g238950v5 LOC8075948 LOC102593449 LOC102627025 LOC104582758 LOC107780719 LOC107776468
Function* tRNA/rRNA methyltransferase (SpoU) family protein uncharacterized LOC100305780 uncharacterized LOC101267645 uncharacterized LOC4337763 uncharacterized LOC100285504 putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase uncharacterized LOC100252797 uncharacterized LOC7469097 putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase uncharacterized protein putative TrmH family tRNA/rRNA methyltransferase putative TrmH family tRNA/rRNA methyltransferase uncharacterized LOC102627025 putative TrmH family tRNA/rRNA methyltransferase uncharacterized LOC107780719 uncharacterized LOC107776468
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03040 Spliceosome 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03010 Ribosome 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 4
bra03015 mRNA surveillance pathway 4
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827225 100305780 101267645 4337763 100285504 103860786 103870822 100252797 7469097 11408462 123180375 123111037 123424361 107897655 107915084 106380630 106440039 5723334 8075948 102593449 102627025 104582758 107780719 107776468
The preparation time of this page was 0.1 [sec].