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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g649400v5   uncharacterized protein 
 ath-u.5   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 gma-u.5   100796633   ribosomal RNA large subunit methyltransferase I 
 osa-u.5   4328457   uncharacterized LOC4328457 
 zma-u.5   100382848   uncharacterized LOC100382848 
 vvi-u.5   100262230   uncharacterized LOC100262230 
 ppo-u.5   7481605   uncharacterized LOC7481605 
 mtr-u.5   120577709   ribosomal RNA large subunit methyltransferase I 

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Top 50 coexpressed genes to CHLRE_16g649400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g649400v5 (cre-r.1 coexpression data)

CoexMap"5723733"


creCHLRE_16g649400v5 | Entrez gene ID : 5723733    
Species cre ath gma osa zma vvi ppo mtr sly sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001698257.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  mito 1  (predict for XP_001698257.2)
Subcellular
localization
TargetP
mito 7  (predict for XP_001698257.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g649400v5

.
ath-u.5
for
AT1G54310

.
gma-u.5
for
100796633

.
osa-u.5
for
4328457

.
zma-u.5
for
100382848

.
vvi-u.5
for
100262230

.
ppo-u.5
for
7481605

.
mtr-u.5
for
120577709

.


Ortholog ID: 11090
Species ath gma osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G54310 LOC100796633 LOC4328457 LOC100382848 LOC103869113 LOC100262230 LOC7481605 LOC120577709 LOC123136625 LOC123132550 LOC123400982 LOC107953614 LOC107913196 LOC106427503 LOC111200986 CHLRE_16g649400v5 LOC8077190 LOC102602589 LOC102626476 LOC100830113 LOC107788632 LOC107760018
Function* S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ribosomal RNA large subunit methyltransferase I uncharacterized LOC4328457 uncharacterized LOC100382848 ribosomal RNA large subunit methyltransferase I uncharacterized LOC100262230 uncharacterized LOC7481605 ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I-like ribosomal RNA large subunit methyltransferase I-like uncharacterized protein ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I uncharacterized LOC102626476 ribosomal RNA large subunit methyltransferase I uncharacterized LOC107788632 uncharacterized LOC107760018
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 3
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 6
bna00770 Pantothenate and CoA biosynthesis 6
bna01210 2-Oxocarboxylic acid metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
sbi00330 Arginine and proline metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841872 100796633 4328457 100382848 103869113 100262230 7481605 120577709 123136625 123132550 123400982 107953614 107913196 106427503 111200986 5723733 8077190 102602589 102626476 100830113 107788632 107760018
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