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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g454100v5   uncharacterized protein 
 ath-u.5   IMP4   Ribosomal RNA processing Brix domain protein 
 gma-u.5   100814677   U3 small nucleolar ribonucleoprotein protein IMP4-like 
 gma-u.5   100803810   U3 small nucleolar ribonucleoprotein protein IMP4-like 
 sly-u.5   101261441   uncharacterized LOC101261441 
 sly-u.5   101253657   uncharacterized LOC101253657 
 osa-u.5   4344688   uncharacterized LOC4344688 
 zma-u.5   100216667   uncharacterized LOC100216667 
 vvi-u.5   100248284   uncharacterized LOC100248284 
 ppo-u.5   7496007   uncharacterized LOC7496007 
 ppo-u.5   7460224   uncharacterized LOC7460224 
 mtr-u.5   11422276   U3 small nucleolar ribonucleoprotein protein IMP4 

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Top 50 coexpressed genes to CHLRE_10g454100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g454100v5 (cre-r.1 coexpression data)

CoexMap"5723909"


creCHLRE_10g454100v5 | Entrez gene ID : 5723909      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0006364 [list] [network] rRNA processing  (218 genes)  IEA  
GO CC
GO:0034457 [list] [network] Mpp10 complex  (3 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0042134 [list] [network] rRNA primary transcript binding  (2 genes)  IEA  
GO:0030515 [list] [network] snoRNA binding  (19 genes)  IEA  
Protein XP_042920420.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  nucl 1,  cyto_mito 1  (predict for XP_042920420.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_042920420.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g454100v5

.
ath-u.5
for
IMP4

.
gma-u.5
for
100814677

.
gma-u.5
for
100803810

.
sly-u.5
for
101261441

.
sly-u.5
for
101253657

.
osa-u.5
for
4344688

.
zma-u.5
for
100216667

.
vvi-u.5
for
100248284

.
ppo-u.5
for
7496007

.
ppo-u.5
for
7460224

.
mtr-u.5
for
11422276

.


Ortholog ID: 7453
Species ath gma gma sly sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol IMP4 LOC100814677 LOC100803810 LOC101253657 LOC101261441 LOC4344688 LOC100216667 LOC103838098 LOC100248284 LOC7496007 LOC7460224 LOC11422276 LOC123147344 LOC123166557 LOC123407047 LOC107900578 LOC107945650 LOC106366504 LOC106392202 CHLRE_10g454100v5 LOC8067854 LOC8065136 LOC102582396 LOC102623180 LOC100841865 LOC107786310 LOC107775574
Function* Ribosomal RNA processing Brix domain protein U3 small nucleolar ribonucleoprotein protein IMP4-like U3 small nucleolar ribonucleoprotein protein IMP4-like uncharacterized LOC101253657 uncharacterized LOC101261441 uncharacterized LOC4344688 uncharacterized LOC100216667 U3 small nucleolar ribonucleoprotein protein IMP4 uncharacterized LOC100248284 uncharacterized LOC7496007 uncharacterized LOC7460224 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4-like U3 small nucleolar ribonucleoprotein protein IMP4-like uncharacterized protein U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 U3 small nucleolar ribonucleoprotein protein IMP4-like uncharacterized LOC102623180 U3 small nucleolar ribonucleoprotein protein IMP4 uncharacterized LOC107786310 uncharacterized LOC107775574
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842682 100814677 100803810 101253657 101261441 4344688 100216667 103838098 100248284 7496007 7460224 11422276 123147344 123166557 123407047 107900578 107945650 106366504 106392202 5723909 8067854 8065136 102582396 102623180 100841865 107786310 107775574
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