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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g455300v5   uncharacterized protein 
 ath-u.5   AT1G20580   Small nuclear ribonucleoprotein family protein 
 ath-u.5   SmD3   snRNP core protein SMD3 
 gma-u.5   100790315   small nuclear ribonucleoprotein SmD3b 
 gma-u.5   100305856   uncharacterized LOC100305856 
 sly-u.5   101256541   small nuclear ribonucleoprotein SmD3b 
 sly-u.5   101250657   small nuclear ribonucleoprotein SmD3b 
 sly-u.5   101247792   small nuclear ribonucleoprotein SmD3b 
 osa-u.5   4327991   small nuclear ribonucleoprotein SmD3b 
 osa-u.5   4332206   small nuclear ribonucleoprotein SmD3b 
 zma-u.5   103633373   small nuclear ribonucleoprotein Sm D3-like 
 zma-u.5   100285722   uncharacterized LOC100285722 
 zma-u.5   100284316   uncharacterized LOC100284316 
 vvi-u.5   109124003   small nuclear ribonucleoprotein SmD3b 
 vvi-u.5   100254787   small nuclear ribonucleoprotein SmD3b 
 vvi-u.5   100250427   small nuclear ribonucleoprotein SmD3b 
 ppo-u.5   7474576   small nuclear ribonucleoprotein SmD3b 
 ppo-u.5   7494696   small nuclear ribonucleoprotein SmD3b 
 mtr-u.5   11426884   small nuclear ribonucleoprotein SmD3b 

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Top 50 coexpressed genes to CHLRE_10g455300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g455300v5 (cre-r.1 coexpression data)

CoexMap"5724099"


creCHLRE_10g455300v5 | Entrez gene ID : 5724099      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 2 2 3 2 3 3 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (16 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (507 genes)  IEA  
GO CC
GO:0034715 [list] [network] pICln-Sm protein complex  (3 genes)  IEA  
GO:0034719 [list] [network] SMN-Sm protein complex  (5 genes)  IEA  
GO:0005687 [list] [network] U4 snRNP  (6 genes)  IEA  
GO:0005689 [list] [network] U12-type spliceosomal complex  (8 genes)  IEA  
GO:0000243 [list] [network] commitment complex  (9 genes)  IEA  
GO:0005682 [list] [network] U5 snRNP  (11 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (14 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (16 genes)  IEA  
GO:0097526 [list] [network] spliceosomal tri-snRNP complex  (23 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (26 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (45 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001698360.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  mito 2,  cysk_nucl 1,  nucl 1,  cysk 1,  cyto_mito 1,  mito_plas 1  (predict for XP_001698360.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001698360.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g455300v5

.
ath-u.5
for
AT1G20580

.
ath-u.5
for
SmD3

.
gma-u.5
for
100790315

.
gma-u.5
for
100305856

.
sly-u.5
for
101256541

.
sly-u.5
for
101250657

.
sly-u.5
for
101247792

.
osa-u.5
for
4327991

.
osa-u.5
for
4332206

.
zma-u.5
for
103633373

.
zma-u.5
for
100285722

.
zma-u.5
for
100284316

.
vvi-u.5
for
109124003

.
vvi-u.5
for
100254787

.
vvi-u.5
for
100250427

.
ppo-u.5
for
7474576

.
ppo-u.5
for
7494696

.
mtr-u.5
for
11426884

.


Ortholog ID: 3747
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol SmD3 AT1G20580 LOC100790315 LOC100305856 LOC101247792 LOC101256541 LOC4327991 LOC4332206 LOC100285722 LOC100284316 LOC103832082 LOC103872847 LOC100250427 LOC100254787 LOC7494696 LOC7474576 LOC11426884 LOC123094041 LOC123099240 LOC123450034 LOC107910684 LOC107922261 LOC106347267 LOC106406519 CHLRE_10g455300v5 LOC8078866 LOC110434419 LOC102585876 LOC102578763 LOC102614429 LOC100821324 LOC107777296 LOC107832377
Function* snRNP core protein SMD3 Small nuclear ribonucleoprotein family protein small nuclear ribonucleoprotein SmD3b uncharacterized LOC100305856 small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b uncharacterized LOC100285722 uncharacterized LOC100284316 small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b uncharacterized protein small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
ath03018 RNA degradation 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma04120 Ubiquitin mediated proteolysis 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00650 Butanoate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03010 Ribosome 6
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03018 RNA degradation 3
zma03060 Protein export 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03010 Ribosome 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03040 Spliceosome 6
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 15
cre03018 RNA degradation 2
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi03018 RNA degradation 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03008 Ribosome biogenesis in eukaryotes 3
sot03018 RNA degradation 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03040 Spliceosome 4
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03040 Spliceosome 5
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843963 838647 100790315 100305856 101247792 101256541 4327991 4332206 100285722 100284316 103832082 103872847 100250427 100254787 7494696 7474576 11426884 123094041 123099240 123450034 107910684 107922261 106347267 106406519 5724099 8078866 110434419 102585876 102578763 102614429 100821324 107777296 107832377
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