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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_11g467647v5   uncharacterized protein 
 ath-u.5   CSN6B   COP9 signalosome subunit 6B 
 ath-u.5   CSN6A   COP9 signalosome subunit 6A 
 gma-u.5   100797079   COP9 signalosome complex subunit 6a 
 gma-u.5   100786026   COP9 signalosome complex subunit 6a 
 sly-u.5   101259087   COP9 signalosome complex subunit 6a 
 osa-u.5   4345944   COP9 signalosome complex subunit 6-like 
 zma-u.5   100283126   uncharacterized LOC100283126 
 zma-u.5   100284689   COP9 signalosome complex subunit 6a 
 vvi-u.5   100246357   COP9 signalosome complex subunit 6a 
 ppo-u.5   18103578   COP9 signalosome complex subunit 6a 
 mtr-u.5   25488496   COP9 signalosome complex subunit 6a 

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Top 50 coexpressed genes to CHLRE_11g467647v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_11g467647v5 (cre-r.1 coexpression data)

CoexMap"5724358"


creCHLRE_11g467647v5 | Entrez gene ID : 5724358      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 2 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000338 [list] [network] protein deneddylation  (19 genes)  IEA  
GO CC
GO:0008180 [list] [network] COP9 signalosome  (23 genes)  IEA  
GO MF
GO:0008237 [list] [network] metallopeptidase activity  (90 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042919398.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  plas 1,  pero 1,  nucl_plas 1,  E.R._vacu 1  (predict for XP_042919398.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042919398.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_11g467647v5

.
ath-u.5
for
CSN6B

.
ath-u.5
for
CSN6A

.
gma-u.5
for
100797079

.
gma-u.5
for
100786026

.
sly-u.5
for
101259087

.
osa-u.5
for
4345944

.
zma-u.5
for
100283126

.
zma-u.5
for
100284689

.
vvi-u.5
for
100246357

.
ppo-u.5
for
18103578

.
mtr-u.5
for
25488496

.


Ortholog ID: 5352
Species ath ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna cre cre sbi sot cit bdi nta nta
Symbol CSN6B CSN6A LOC100786026 LOC100797079 LOC101259087 LOC4345944 LOC100284689 LOC100283126 LOC103866136 LOC103861629 LOC100246357 LOC18103578 LOC25488496 LOC123150993 LOC123166148 LOC123409568 LOC107893551 LOC107926123 LOC106437668 CHLRE_11g467645v5 CHLRE_11g467647v5 LOC8067010 LOC102584188 LOC102619095 LOC100836366 LOC107770370 LOC107824680
Function* COP9 signalosome subunit 6B COP9 signalosome subunit 6A COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6-like COP9 signalosome complex subunit 6a uncharacterized LOC100283126 COP9 signalosome complex subunit 6b COP9 signalosome complex subunit 6b COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6 COP9 signalosome complex subunit 6 COP9 signalosome complex subunit 6 COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a uncharacterized protein uncharacterized protein COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a-like COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 3
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma04120 Ubiquitin mediated proteolysis 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 6
zma00020 Citrate cycle (TCA cycle) 6
zma01200 Carbon metabolism 6
zma01210 2-Oxocarboxylic acid metabolism 6
zma00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 3
zma03015 mRNA surveillance pathway 3
zma04382 Cornified envelope formation 3
zma00860 Porphyrin metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 2
bra01200 Carbon metabolism 2
bra01210 2-Oxocarboxylic acid metabolism 2
bra00190 Oxidative phosphorylation 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 5
hvu00510 N-Glycan biosynthesis 2
hvu00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi04145 Phagosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 7
bna04145 Phagosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 10
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 4
sbi03010 Ribosome 3
sbi04145 Phagosome 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 7
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
bdi03010 Ribosome 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01210 2-Oxocarboxylic acid metabolism 4
nta01230 Biosynthesis of amino acids 4
nta00020 Citrate cycle (TCA cycle) 2
nta01200 Carbon metabolism 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828749 835727 100786026 100797079 101259087 4345944 100284689 100283126 103866136 103861629 100246357 18103578 25488496 123150993 123166148 123409568 107893551 107926123 106437668 66055232 5724358 8067010 102584188 102619095 100836366 107770370 107824680
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