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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g602850v5   uncharacterized protein 
 ath-u.5   CCR1   cold, circadian rhythm, and RNA binding 1 
 ath-u.5   AT1G73530   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   GR-RBP3   glycine-rich RNA-binding protein 3 
 gma-u.5   100806292   glycine-rich RNA-binding protein GRP1A 
 gma-u.5   112998378   glycine-rich RNA-binding protein GRP1A-like 
 sly-u.5   101266771   glycine-rich RNA-binding protein 
 sly-u.5   GRP1   glycine-rich RNA-binding protein-like 
 sly-u.5   101262262   glycine-rich RNA-binding protein 
 osa-u.5   9269592   organelle RRM domain-containing protein 6, chloroplastic 
 osa-u.5   4338138   glycine-rich RNA-binding protein blt801 
 osa-u.5   4324334   glycine-rich RNA-binding protein 4, mitochondrial 
 zma-u.5   100283722   uncharacterized LOC100283722 
 zma-u.5   100191295   Glycine-rich RNA-binding protein 3 mitochondrial 
 zma-u.5   100194217   responsive to abscisic acid15 
 vvi-u.5   100854881   small RNA-binding protein 11, chloroplastic 
 vvi-u.5   100853676   glycine-rich RNA-binding protein GRP2A 
 vvi-u.5   100265324   glycine-rich RNA-binding protein 4, mitochondrial 
 ppo-u.5   18105741   glycine-rich RNA-binding protein 3, mitochondrial 
 ppo-u.5   7485193   organelle RRM domain-containing protein 6, chloroplastic 
 ppo-u.5   7485722   small RNA-binding protein 11, chloroplastic 
 mtr-u.5   11436305   glycine-rich RNA-binding protein 2, mitochondrial 
 mtr-u.5   11438930   glycine-rich RNA-binding protein 4, mitochondrial 
 mtr-u.5   11438254   small RNA-binding protein 11, chloroplastic 

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Top 50 coexpressed genes to CHLRE_13g602850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g602850v5 (cre-r.1 coexpression data)

CoexMap"5724659"


creCHLRE_13g602850v5 | Entrez gene ID : 5724659      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 2 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (14 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (17 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (26 genes)  IEA  
GO MF
GO:0030619 [list] [network] U1 snRNA binding  (5 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
Protein XP_042917774.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_042917774.1)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for XP_042917774.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g602850v5

.
ath-u.5
for
CCR1

.
ath-u.5
for
AT1G73530

.
ath-u.5
for
GR-RBP3

.
gma-u.5
for
100806292

.
gma-u.5
for
112998378

.
sly-u.5
for
101266771

.
sly-u.5
for
GRP1

.
sly-u.5
for
101262262

.
osa-u.5
for
9269592

.
osa-u.5
for
4338138

.
osa-u.5
for
4324334

.
zma-u.5
for
100283722

.
zma-u.5
for
100191295

.
zma-u.5
for
100194217

.
vvi-u.5
for
100854881

.
vvi-u.5
for
100853676

.
vvi-u.5
for
100265324

.
ppo-u.5
for
18105741

.
ppo-u.5
for
7485193

.
ppo-u.5
for
7485722

.
mtr-u.5
for
11436305

.
mtr-u.5
for
11438930

.
mtr-u.5
for
11438254

.


Ortholog ID: 75
Species ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi nta nta
Symbol AT3G08000 LOC100796704 LOC100305467 LOC101245474 LOC101254436 LOC4343831 LOC4352279 LOC542725 LOC100284207 LOC103835157 LOC103851541 LOC100246039 LOC100263981 LOC18109442 LOC7485193 LOC25497346 LOC11436305 LOC123134221 LOC123097872 LOC123403078 LOC123400027 LOC107960836 LOC107952135 LOC106365965 LOC106439949 CHLRE_09g392350v5 CHLRE_02g079400v5 LOC8075292 LOC110434104 LOC102587142 LOC102581514 LOC102608923 LOC102627364 LOC100842305 LOC107759364 LOC142161681
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA recognition motif-containing protein putative glycine-rich RNA binding protein glycine-rich RNA-binding protein 4, mitochondrial glycine-rich RNA-binding protein 2, mitochondrial glycine-rich RNA-binding protein 2, mitochondrial glycine-rich RNA-binding protein blt801 uncharacterized LOC542725 glycine-rich RNA-binding protein 7 glycine-rich RNA-binding protein 10 cold-inducible RNA-binding protein organelle RRM domain-containing protein 6, chloroplastic small RNA-binding protein 11, chloroplastic small RNA-binding protein 11, chloroplastic organelle RRM domain-containing protein 6, chloroplastic organelle RRM domain-containing protein 6, chloroplastic glycine-rich RNA-binding protein 2, mitochondrial glycine-rich RNA-binding protein organelle RRM domain-containing protein 6, chloroplastic glycine-rich RNA-binding protein-like glycine-rich RNA-binding protein blt801-like small RNA-binding protein 11, chloroplastic glycine-rich RNA-binding protein GRP1A glycine-rich RNA-binding protein GRP1A glycine-rich RNA-binding protein 3, mitochondrial uncharacterized protein uncharacterized protein small RNA-binding protein 11, chloroplastic glycine-rich RNA-binding protein 4, mitochondrial-like glycine-rich RNA-binding protein glycine-rich RNA-binding protein 4, mitochondrial small RNA-binding protein 11, chloroplastic organelle RRM domain-containing protein 2, mitochondrial-like glycine-rich RNA-binding protein blt801 glycine-rich RNA-binding protein 2, mitochondrial-like glycine-rich RNA-binding protein-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03010 Ribosome 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00940 Phenylpropanoid biosynthesis 3
ghi03013 Nucleocytoplasmic transport 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04626 Plant-pathogen interaction 4
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04145 Phagosome 3
sbi04517 IgSF CAM signaling 3
sbi04814 Motor proteins 3
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 15
nta03008 Ribosome biogenesis in eukaryotes 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819991 100796704 100305467 101245474 101254436 4343831 4352279 542725 100284207 103835157 103851541 100246039 100263981 18109442 7485193 25497346 11436305 123134221 123097872 123403078 123400027 107960836 107952135 106365965 106439949 5720095 5727272 8075292 110434104 102587142 102581514 102608923 102627364 100842305 107759364 142161681
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