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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g606200v5   uncharacterized protein 
 ath-u.5   AT1G06560   NOL1/NOP2/sun family protein 
 gma-u.5   100813856   rRNA (cytosine-C(5))-methyltransferase NOP2C 
 sly-u.5   101245183   rRNA (cytosine-C(5))-methyltransferase NOP2C 
 osa-u.5   4345386   rRNA (cytosine-C(5))-methyltransferase NOP2C 
 zma-u.5   100279356   NOL1/NOP2/sun family protein 
 vvi-u.5   100253946   rRNA (cytosine-C(5))-methyltransferase NOP2C 
 ppo-u.5   7464810   rRNA (cytosine-C(5))-methyltransferase NOP2C 
 mtr-u.5   11429959   rRNA (cytosine-C(5))-methyltransferase NOP2C 

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Top 50 coexpressed genes to CHLRE_13g606200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g606200v5 (cre-r.1 coexpression data)

CoexMap"5724691"


creCHLRE_13g606200v5 | Entrez gene ID : 5724691    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001510 [list] [network] RNA methylation  (59 genes)  IEA  
GO CC
GO MF
GO:0008168 [list] [network] methyltransferase activity  (194 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042917855.1 [sequence] [blastp]
XP_042917856.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  mito 3,  chlo 1,  E.R. 1,  pero 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1,  cyto_plas 1  (predict for XP_042917855.1)
cyto 3,  mito 3,  chlo 1,  E.R. 1,  pero 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1,  cyto_plas 1  (predict for XP_042917856.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042917855.1)
other 8  (predict for XP_042917856.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g606200v5

.
ath-u.5
for
AT1G06560

.
gma-u.5
for
100813856

.
sly-u.5
for
101245183

.
osa-u.5
for
4345386

.
zma-u.5
for
100279356

.
vvi-u.5
for
100253946

.
ppo-u.5
for
7464810

.
mtr-u.5
for
11429959

.


Ortholog ID: 9760
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sot cit bdi nta nta
Symbol AT1G06560 LOC100813856 LOC101245183 LOC4345386 LOC100279356 LOC103836472 LOC103844027 LOC100253946 LOC7464810 LOC11429959 LOC123155977 LOC123148166 LOC123407033 LOC107924441 LOC107912676 LOC106362214 LOC125591414 CHLRE_13g606200v5 LOC102583774 LOC102618071 LOC100826360 LOC107759550 LOC107774712
Function* NOL1/NOP2/sun family protein rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C NOL1/NOP2/sun family protein tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C-like uncharacterized protein putative methyltransferase NSUN6 rRNA (cytosine-C(5))-methyltransferase NOP2C putative methyltransferase NSUN6 rRNA (cytosine-C(5))-methyltransferase NOP2C-like rRNA (cytosine-C(5))-methyltransferase NOP2C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03030 DNA replication 2
vvi03410 Base excision repair 2
vvi03420 Nucleotide excision repair 2
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03440 Homologous recombination 3
ppo03030 DNA replication 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03440 Homologous recombination 3
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 8
cit03040 Spliceosome 3
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837167 100813856 101245183 4345386 100279356 103836472 103844027 100253946 7464810 11429959 123155977 123148166 123407033 107924441 107912676 106362214 125591414 5724691 102583774 102618071 100826360 107759550 107774712
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