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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g685217v5   uncharacterized protein 
 ath-u.5   AT4G37130   hydroxyproline-rich glycoprotein family protein 
 gma-u.5   100805204   nuclear pore complex protein NUP58 
 gma-u.5   100776992   nuclear pore complex protein NUP58 
 sly-u.5   101255050   nuclear pore complex protein NUP58 
 osa-u.5   9267365   nuclear pore complex protein NUP58 
 osa-u.5   4347240   nuclear pore complex protein NUP58 
 zma-u.5   100194061   nucleoporin p58/p45 
 zma-u.5   100282882   nucleoporin p58/p45 
 zma-u.5   103645634   nuclear pore complex protein NUP58 
 vvi-u.5   100855059   nuclear pore complex protein NUP58 
 ppo-u.5   7477983   nuclear pore complex protein NUP58 
 mtr-u.5   11413486   nuclear pore complex protein NUP58 

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Top 50 coexpressed genes to CHLRE_16g685217v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g685217v5 (cre-r.1 coexpression data)

CoexMap"5724753"


creCHLRE_16g685217v5 | Entrez gene ID : 5724753    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 3 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006913 [list] [network] nucleocytoplasmic transport  (97 genes)  IEA  
GO CC
GO:0005643 [list] [network] nuclear pore  (40 genes)  IEA  
GO MF
GO:0008139 [list] [network] nuclear localization sequence binding  (10 genes)  IEA  
GO:0017056 [list] [network] structural constituent of nuclear pore  (26 genes)  IEA  
Protein XP_042915756.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  nucl 2  (predict for XP_042915756.1)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for XP_042915756.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g685217v5

.
ath-u.5
for
AT4G37130

.
gma-u.5
for
100805204

.
gma-u.5
for
100776992

.
sly-u.5
for
101255050

.
osa-u.5
for
9267365

.
osa-u.5
for
4347240

.
zma-u.5
for
100194061

.
zma-u.5
for
100282882

.
zma-u.5
for
103645634

.
vvi-u.5
for
100855059

.
ppo-u.5
for
7477983

.
mtr-u.5
for
11413486

.


Ortholog ID: 5565
Species ath gma gma sly osa osa zma zma bra bra vvi ppo mtr tae tae hvu hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol AT4G37130 LOC100776992 LOC100805204 LOC101255050 LOC4347240 LOC9267365 LOC100282882 LOC100194061 LOC103835013 LOC103864202 LOC100855059 LOC7477983 LOC11413486 LOC123121714 LOC123105135 LOC123397168 LOC123398565 LOC107945314 LOC107933073 LOC106437580 CHLRE_16g685217v5 LOC110433043 LOC102598416 LOC102614875 LOC100841579 LOC107814601 LOC107765235
Function* hydroxyproline-rich glycoprotein family protein nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nucleoporin p58/p45 nucleoporin p58/p45 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58-like nuclear pore complex protein NUP58-like nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 uncharacterized protein nuclear pore complex protein NUP58-like nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58 nuclear pore complex protein NUP58
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 5
gma03040 Spliceosome 4
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 6
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae00240 Pyrimidine metabolism 2
tae01232 Nucleotide metabolism 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
hvu03013 Nucleocytoplasmic transport 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03008 Ribosome biogenesis in eukaryotes 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829867 100776992 100805204 101255050 4347240 9267365 100282882 100194061 103835013 103864202 100855059 7477983 11413486 123121714 123105135 123397168 123398565 107945314 107933073 106437580 5724753 110433043 102598416 102614875 100841579 107814601 107765235
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