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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g199647v5   uncharacterized protein 
 ath-u.5   EIF4A-III   eukaryotic initiation factor 4A-III 
 ath-u.5   AT1G51380   DEA(D/H)-box RNA helicase family protein 
 gma-u.5   100795032   eukaryotic initiation factor 4A-3 
 gma-u.5   100800020   eukaryotic initiation factor 4A-3 
 sly-u.5   101256152   eukaryotic initiation factor 4A-3 
 osa-u.5   EIF4A3A   eukaryotic initiation factor 4A-III homolog A-like 
 osa-u.5   4333273   eukaryotic initiation factor 4A-III homolog B-like 
 zma-u.5   732749   RH2 protein-like 
 zma-u.5   103627913   eukaryotic initiation factor 4A-III homolog A 
 vvi-u.5   100255368   eukaryotic initiation factor 4A-3 
 ppo-u.5   7456321   eukaryotic initiation factor 4A-3 
 ppo-u.5   7492084   eukaryotic initiation factor 4A-3 
 mtr-u.5   25488222   eukaryotic initiation factor 4A-3 

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Top 50 coexpressed genes to CHLRE_03g199647v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g199647v5 (cre-r.1 coexpression data)

CoexMap"5724972"


creCHLRE_03g199647v5 | Entrez gene ID : 5724972      
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 2 2 1 2 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03013 [list] [network] Nucleocytoplasmic transport (47 genes)
cre03015 [list] [network] mRNA surveillance pathway (40 genes)
cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO CC
GO:0071013 [list] [network] catalytic step 2 spliceosome  (45 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (44 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_001699375.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  plas 1,  pero 1,  chlo_mito 1,  nucl_plas 1  (predict for XP_001699375.2)
Subcellular
localization
TargetP
other 9  (predict for XP_001699375.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g199647v5

.
ath-u.5
for
EIF4A-III

.
ath-u.5
for
AT1G51380

.
gma-u.5
for
100795032

.
gma-u.5
for
100800020

.
sly-u.5
for
101256152

.
osa-u.5
for
EIF4A3A

.
osa-u.5
for
4333273

.
zma-u.5
for
732749

.
zma-u.5
for
103627913

.
vvi-u.5
for
100255368

.
ppo-u.5
for
7456321

.
ppo-u.5
for
7492084

.
mtr-u.5
for
25488222

.


Ortholog ID: 3691
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol EIF4A-III AT1G51380 LOC100800020 LOC100795032 LOC101256152 EIF4A3A LOC4333273 LOC732749 LOC103627913 LOC103832857 LOC103836967 LOC100255368 LOC7456321 LOC7492084 LOC25488222 LOC123140120 LOC123055162 LOC123428372 LOC123401124 LOC107920423 LOC107928882 LOC106411012 LOC106425130 CHLRE_03g199647v5 LOC8084458 LOC102579743 LOC102621986 LOC100830518 LOC100838725 LOC107779209 LOC107770285
Function* eukaryotic initiation factor 4A-III DEA(D/H)-box RNA helicase family protein eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-III homolog A-like eukaryotic initiation factor 4A-III homolog B-like RH2 protein-like eukaryotic initiation factor 4A-III homolog A DEAD-box ATP-dependent RNA helicase 34 eukaryotic initiation factor 4A-III homolog eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-III homolog B eukaryotic initiation factor 4A-III homolog B eukaryotic initiation factor 4A-III homolog B-like eukaryotic initiation factor 4A-III homolog B eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-III homolog eukaryotic initiation factor 4A-III homolog uncharacterized protein DEAD-box ATP-dependent RNA helicase 2 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-III homolog A eukaryotic initiation factor 4A-III homolog A eukaryotic initiation factor 4A-3-like eukaryotic initiation factor 4A-3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 5
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 3
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 8
gma03013 Nucleocytoplasmic transport 5
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 6
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 5
gma04626 Plant-pathogen interaction 2
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 5
sly03013 Nucleocytoplasmic transport 3
sly03040 Spliceosome 3
sly03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 2
osa03040 Spliceosome 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03050 Proteasome 2
osa03015 mRNA surveillance pathway 2
osa03040 Spliceosome 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03015 mRNA surveillance pathway 4
zma03040 Spliceosome 3
zma03050 Proteasome 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
mtr03013 Nucleocytoplasmic transport 4
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu04144 Endocytosis 2
hvu03050 Proteasome 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi03013 Nucleocytoplasmic transport 7
ghi03040 Spliceosome 7
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03013 Nucleocytoplasmic transport 6
sot03015 mRNA surveillance pathway 5
sot03010 Ribosome 3
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 4
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 8
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta00600 Sphingolipid metabolism 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821513 841562 100800020 100795032 101256152 4326580 4333273 732749 103627913 103832857 103836967 100255368 7456321 7492084 25488222 123140120 123055162 123428372 123401124 107920423 107928882 106411012 106425130 5724972 8084458 102579743 102621986 100830518 100838725 107779209 107770285
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