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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g199311v5   uncharacterized protein 
 ath-u.5   VCL1   vacuoleless1 (VCL1) 
 gma-u.5   100817661   protein VACUOLELESS1 
 gma-u.5   100812079   protein VACUOLELESS1 
 sly-u.5   101250423   protein VACUOLELESS1 
 osa-u.5   4326864   protein VACUOLELESS1 
 zma-u.5   103636149   protein VACUOLELESS1 
 vvi-u.5   100260824   protein VACUOLELESS1 
 ppo-u.5   7464653   protein VACUOLELESS1 
 ppo-u.5   7468728   protein VACUOLELESS1 
 mtr-u.5   11407131   protein VACUOLELESS1 

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Top 50 coexpressed genes to CHLRE_03g199311v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g199311v5 (cre-r.1 coexpression data)

CoexMap"5725018"


creCHLRE_03g199311v5 | Entrez gene ID : 5725018    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre04148 [list] [network] Efferocytosis (19 genes)
GO BP
GO:0042144 [list] [network] vacuole fusion, non-autophagic  (1 genes)  IEA  
GO:0016197 [list] [network] endosomal transport  (41 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (159 genes)  IEA  
GO CC
GO:0005765 [list] [network] lysosomal membrane  (4 genes)  IEA  
GO:0030897 [list] [network] HOPS complex  (5 genes)  IEA  
GO:0005768 [list] [network] endosome  (71 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0003779 [list] [network] actin binding  (49 genes)  IEA  
Protein XP_042926613.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 4  (predict for XP_042926613.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042926613.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g199311v5

.
ath-u.5
for
VCL1

.
gma-u.5
for
100817661

.
gma-u.5
for
100812079

.
sly-u.5
for
101250423

.
osa-u.5
for
4326864

.
zma-u.5
for
103636149

.
vvi-u.5
for
100260824

.
ppo-u.5
for
7464653

.
ppo-u.5
for
7468728

.
mtr-u.5
for
11407131

.


Ortholog ID: 9425
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol VCL1 LOC100812079 LOC100817661 LOC101250423 LOC4326864 LOC103636149 LOC103857755 LOC100260824 LOC7468728 LOC7464653 LOC11407131 LOC123070305 LOC123078756 LOC123444053 LOC107954851 LOC107955701 LOC106438171 LOC106427750 CHLRE_03g199311v5 LOC8060148 LOC102604066 LOC102617306 LOC100824908 LOC107828785 LOC107798004
Function* vacuoleless1 (VCL1) protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1-like protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 uncharacterized protein protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1-like protein VACUOLELESS1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04148 Efferocytosis 4
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma04148 Efferocytosis 2
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma04148 Efferocytosis 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 3
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 3
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 4
ppo04144 Endocytosis 4
ppo05100 Bacterial invasion of epithelial cells 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03420 Nucleotide excision repair 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 7
ghi04142 Lysosome 4
ghi05100 Bacterial invasion of epithelial cells 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 7
ghi04142 Lysosome 4
ghi05100 Bacterial invasion of epithelial cells 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
bna04146 Peroxisome 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre00510 N-Glycan biosynthesis 3
cre03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi04142 Lysosome 3
sbi04144 Endocytosis 3
sbi05100 Bacterial invasion of epithelial cells 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot00900 Terpenoid backbone biosynthesis 2
sot00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 4
cit04120 Ubiquitin mediated proteolysis 3
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta03083 Polycomb repressive complex 2
nta04148 Efferocytosis 2
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818380 100812079 100817661 101250423 4326864 103636149 103857755 100260824 7468728 7464653 11407131 123070305 123078756 123444053 107954851 107955701 106438171 106427750 5725018 8060148 102604066 102617306 100824908 107828785 107798004
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