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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g733250v5   uncharacterized protein 
 ath-u.5   AT3G10060   FKBP-like peptidyl-prolyl cis-trans isomerase family protein 
 gma-u.5   100815603   peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic 
 gma-u.5   100305843   uncharacterized LOC100305843 
 sly-u.5   FKBP16-4   peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic 
 osa-u.5   9267938   peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic 
 zma-u.5   100272860   putative FKBP-type peptidyl-prolyl cis-trans isomerase family protein 
 vvi-u.5   100260611   peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic 
 ppo-u.5   7486506   peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic 
 mtr-u.5   11420788   peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic 

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Top 50 coexpressed genes to CHLRE_17g733250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g733250v5 (cre-r.1 coexpression data)

CoexMap"5725115"


creCHLRE_17g733250v5 | Entrez gene ID : 5725115      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009543 [list] [network] chloroplast thylakoid lumen  (6 genes)  IEA  
GO MF
GO:0003755 [list] [network] peptidyl-prolyl cis-trans isomerase activity  (57 genes)  IEA  
Protein XP_001699596.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 4,  nucl 1  (predict for XP_001699596.1)
Subcellular
localization
TargetP
chlo 8,  mito 7  (predict for XP_001699596.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g733250v5

.
ath-u.5
for
AT3G10060

.
gma-u.5
for
100815603

.
gma-u.5
for
100305843

.
sly-u.5
for
FKBP16-4

.
osa-u.5
for
9267938

.
zma-u.5
for
100272860

.
vvi-u.5
for
100260611

.
ppo-u.5
for
7486506

.
mtr-u.5
for
11420788

.


Ortholog ID: 10071
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G10060 LOC100305843 LOC100815603 FKBP16-4 LOC9267938 LOC100272860 LOC103870491 LOC100260611 LOC7486506 LOC11420788 LOC123104159 LOC123112397 LOC123399375 LOC121230379 LOC107905333 LOC106410272 LOC125609097 CHLRE_17g733250v5 LOC8075048 LOC102582066 LOC102620835 LOC100822670 LOC107791153 LOC107788347
Function* FKBP-like peptidyl-prolyl cis-trans isomerase family protein uncharacterized LOC100305843 peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic putative FKBP-type peptidyl-prolyl cis-trans isomerase family protein peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like uncharacterized protein peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00260 Glycine, serine and threonine metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
sly01200 Carbon metabolism 2
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 3
osa01230 Biosynthesis of amino acids 3
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00710 Carbon fixation by Calvin cycle 2
osa00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00620 Pyruvate metabolism 2
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 3
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00340 Histidine metabolism 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820167 100305843 100815603 101251715 9267938 100272860 103870491 100260611 7486506 11420788 123104159 123112397 123399375 121230379 107905333 106410272 125609097 5725115 8075048 102582066 102620835 100822670 107791153 107788347
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