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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g112850v5   uncharacterized protein 
 ath-u.5   AT3G24200   FAD/NAD(P)-binding oxidoreductase family protein 
 gma-u.5   100807800   ubiquinone biosynthesis monooxygenase COQ6, mitochondrial 
 sly-u.5   101257707   uncharacterized LOC101257707 
 osa-u.5   4334721   uncharacterized LOC4334721 
 zma-u.5   100382613   uncharacterized LOC100382613 
 vvi-u.5   100248856   uncharacterized LOC100248856 
 ppo-u.5   7496073   uncharacterized LOC7496073 
 mtr-u.5   11446703   ubiquinone biosynthesis monooxygenase COQ6, mitochondrial 
 mtr-u.5   11427532   ubiquinone biosynthesis monooxygenase COQ6, mitochondrial 

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Top 50 coexpressed genes to CHLRE_02g112850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g112850v5 (cre-r.1 coexpression data)

CoexMap"5725232"


creCHLRE_02g112850v5 | Entrez gene ID : 5725232      
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (22 genes)
cre01240 [list] [network] Biosynthesis of cofactors (149 genes)
GO BP
GO:0016120 [list] [network] carotene biosynthetic process  (2 genes)  IEA  
GO:0016123 [list] [network] xanthophyll biosynthetic process  (4 genes)  IEA  
GO:0006744 [list] [network] ubiquinone biosynthetic process  (10 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO MF
GO:0071949 [list] [network] FAD binding  (46 genes)  IEA  
GO:0016705 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  (128 genes)  IEA  
Protein XP_001699907.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1  (predict for XP_001699907.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_001699907.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g112850v5

.
ath-u.5
for
AT3G24200

.
gma-u.5
for
100807800

.
sly-u.5
for
101257707

.
osa-u.5
for
4334721

.
zma-u.5
for
100382613

.
vvi-u.5
for
100248856

.
ppo-u.5
for
7496073

.
mtr-u.5
for
11446703

.
mtr-u.5
for
11427532

.


Ortholog ID: 7595
Species ath gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G24200 LOC100807800 LOC101257707 LOC4334721 LOC100382613 LOC103828683 LOC100248856 LOC7496073 LOC11446703 LOC11427532 LOC123084128 LOC123087733 LOC123394970 LOC107890577 LOC121220784 LOC106453309 LOC106445454 CHLRE_02g112850v5 LOC8080177 LOC102581687 LOC102630098 LOC100823739 LOC142182671 LOC107821407
Function* FAD/NAD(P)-binding oxidoreductase family protein ubiquinone biosynthesis monooxygenase COQ6, mitochondrial uncharacterized LOC101257707 uncharacterized LOC4334721 uncharacterized LOC100382613 ubiquinone biosynthesis monooxygenase COQ6, mitochondrial uncharacterized LOC100248856 uncharacterized LOC7496073 ubiquinone biosynthesis monooxygenase COQ6, mitochondrial ubiquinone biosynthesis monooxygenase COQ6, mitochondrial ubiquinone biosynthesis monooxygenase COQ6, mitochondrial-like ubiquinone biosynthesis monooxygenase COQ6, mitochondrial ubiquinone biosynthesis monooxygenase COQ6, mitochondrial ubiquinone biosynthesis monooxygenase COQ6, mitochondrial ubiquinone biosynthesis monooxygenase COQ6, mitochondrial ubiquinone biosynthesis monooxygenase COQ6, mitochondrial-like ubiquinone biosynthesis monooxygenase COQ6, mitochondrial uncharacterized protein ubiquinone biosynthesis monooxygenase COQ6, mitochondrial ubiquinone biosynthesis monooxygenase COQ6, mitochondrial uncharacterized LOC102630098 ubiquinone biosynthesis monooxygenase COQ6, mitochondrial uncharacterized LOC142182671 uncharacterized LOC107821407
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 3
ath03083 Polycomb repressive complex 2
ath03008 Ribosome biogenesis in eukaryotes 2
ath03015 mRNA surveillance pathway 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 7
sly03040 Spliceosome 3
sly04144 Endocytosis 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00910 Nitrogen metabolism 3
osa01310 Nitrogen cycle 3
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 6
bra04145 Phagosome 5
bra04142 Lysosome 2
bra04144 Endocytosis 2
bra00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 4
mtr00240 Pyrimidine metabolism 2
mtr00670 One carbon pool by folate 2
mtr00790 Folate biosynthesis 2
mtr01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 4
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit01240 Biosynthesis of cofactors 2
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 7
bdi03018 RNA degradation 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 3
nta03050 Proteasome 3
nta04016 MAPK signaling pathway - plant 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 7
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta04712 Circadian rhythm - plant 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822006 100807800 101257707 4334721 100382613 103828683 100248856 7496073 11446703 11427532 123084128 123087733 123394970 107890577 121220784 106453309 106445454 5725232 8080177 102581687 102630098 100823739 142182671 107821407
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