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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g102950v5   uncharacterized protein 
 ath-u.5   CPL4   C-terminal domain phosphatase-like 4 
 gma-u.5   100800381   RNA polymerase II C-terminal domain phosphatase-like 4 
 gma-u.5   100785033   RNA polymerase II C-terminal domain phosphatase-like 4 
 sly-u.5   101264737   RNA polymerase II C-terminal domain phosphatase-like 4 
 osa-u.5   4338679   RNA polymerase II C-terminal domain phosphatase-like 4 
 zma-u.5   100286085   CPL3 
 bra-r.6   103845238   RNA polymerase II C-terminal domain phosphatase-like 4 
 bra-r.6   103856720   RNA polymerase II C-terminal domain phosphatase-like 4 
 vvi-u.5   100854176   RNA polymerase II C-terminal domain phosphatase-like 4 
 vvi-u.5   100852833   RNA polymerase II C-terminal domain phosphatase-like 4 
 mtr-u.5   25494112   RNA polymerase II C-terminal domain phosphatase-like 4 
 tae-r.2   123189137   RNA polymerase II C-terminal domain phosphatase-like 4 
 tae-r.2   123045386   RNA polymerase II C-terminal domain phosphatase-like 4 
 tae-r.2   123054355   RNA polymerase II C-terminal domain phosphatase-like 4 
 hvu-r.1   123442381   RNA polymerase II C-terminal domain phosphatase-like 4 
 hvu-r.1   123426640   RNA polymerase II C-terminal domain phosphatase-like 4 
 ghi-r.1   107927509   RNA polymerase II C-terminal domain phosphatase-like 4 
 ghi-r.1   107938696   RNA polymerase II C-terminal domain phosphatase-like 4 
 bna-r.1   106371573   RNA polymerase II C-terminal domain phosphatase-like 4 
 bna-r.1   106387183   RNA polymerase II C-terminal domain phosphatase-like 4 
 bna-r.1   106425997   RNA polymerase II C-terminal domain phosphatase-like 4 
 sbi-r.1   8076850   RNA polymerase II C-terminal domain phosphatase-like 4 
 sbi-r.1   8069340   RNA polymerase II C-terminal domain phosphatase-like 4 
 sot-r.1   102591519   RNA polymerase II C-terminal domain phosphatase-like 4 
 cit-r.1   102609513   RNA polymerase II C-terminal domain phosphatase-like 4 
 cit-r.1   107176483   RNA polymerase II C-terminal domain phosphatase-like 4 
 bdi-r.1   100837063   RNA polymerase II C-terminal domain phosphatase-like 4 
 bdi-r.1   100831091   RNA polymerase II C-terminal domain phosphatase-like 4 
 nta-r.1   107802706   RNA polymerase II C-terminal domain phosphatase-like 4 
 nta-r.1   107779643   RNA polymerase II C-terminal domain phosphatase-like 4 
 nta-r.1   107791237   RNA polymerase II C-terminal domain phosphatase-like 4 

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Top 50 coexpressed genes to CHLRE_02g102950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g102950v5 (cre-r.1 coexpression data)

CoexMap"5725340"


creCHLRE_02g102950v5 | Entrez gene ID : 5725340    
Species cre ath gma sly osa zma bra vvi mtr tae hvu ghi bna sbi sot cit bdi nta ppo
Paralog 1 1 2 1 1 1 2 2 1 3 2 2 3 2 1 2 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity  (5 genes)  IEA  
Protein XP_042927384.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  plas 1,  cyto_E.R. 1  (predict for XP_042927384.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042927384.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g102950v5
ath-u.5
for
CPL4
gma-u.5
for
100800381
gma-u.5
for
100785033
sly-u.5
for
101264737
osa-u.5
for
4338679
zma-u.5
for
100286085
bra-r.6
for
103845238
bra-r.6
for
103856720
vvi-u.5
for
100854176
vvi-u.5
for
100852833
mtr-u.5
for
25494112
tae-r.2
for
123189137
tae-r.2
for
123045386
tae-r.2
for
123054355
hvu-r.1
for
123442381
hvu-r.1
for
123426640
ghi-r.1
for
107927509
ghi-r.1
for
107938696
bna-r.1
for
106371573
bna-r.1
for
106387183
bna-r.1
for
106425997
sbi-r.1
for
8076850
sbi-r.1
for
8069340
sot-r.1
for
102591519
cit-r.1
for
102609513
cit-r.1
for
107176483
bdi-r.1
for
100837063
bdi-r.1
for
100831091
nta-r.1
for
107802706
nta-r.1
for
107779643
nta-r.1
for
107791237


Ortholog ID: 3878
Species cre ath gma gma sly osa zma bra bra vvi vvi tae tae tae hvu hvu ghi ghi bna bna bna sbi sbi sot cit cit bdi bdi nta nta nta
Symbol CHLRE_02g102950v5 CPL4 LOC100800381 LOC100785033 LOC101264737 LOC4338679 LOC100286085 LOC103845238 LOC103856720 LOC100854176 LOC100852833 LOC123045386 LOC123054355 LOC123054365 LOC123442381 LOC123426640 LOC107927509 LOC107938696 LOC106387183 LOC106425997 LOC106435557 LOC8076850 LOC8069340 LOC102591519 LOC102609513 LOC107176483 LOC100837063 LOC100831091 LOC107802706 LOC107779643 LOC107791237
Function* uncharacterized protein C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 CPL3 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath00480 Glutathione metabolism 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03015 mRNA surveillance pathway 4
tae04141 Protein processing in endoplasmic reticulum 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 2
tae01210 2-Oxocarboxylic acid metabolism 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta03050 Proteasome 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5725340 5008312 100800381 100785033 101264737 4338679 100286085 103845238 103856720 100854176 100852833 123045386 123054355 123054365 123442381 123426640 107927509 107938696 106387183 106425997 106435557 8076850 8069340 102591519 102609513 107176483 100837063 100831091 107802706 107779643 107791237
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