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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g113700v5   uncharacterized protein 
 ath-u.5   AT2G03390   uvrB/uvrC motif-containing protein 
 gma-u.5   100794023   clp protease adapter protein ClpF, chloroplastic 
 gma-u.5   100783767   clp protease adapter protein ClpF, chloroplastic 
 sly-u.5   101251088   clp protease adapter protein ClpF, chloroplastic 
 osa-u.5   9269022   clp protease adapter protein ClpF, chloroplastic 
 osa-u.5   4344777   clp protease adapter protein ClpF, chloroplastic 
 zma-u.5   100280211   uncharacterized LOC100280211 
 vvi-u.5   100266199   clp protease adapter protein ClpF, chloroplastic 
 ppo-u.5   7492899   clp protease adapter protein ClpF, chloroplastic 
 mtr-u.5   11408922   clp protease adapter protein ClpF, chloroplastic 

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Top 50 coexpressed genes to CHLRE_02g113700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g113700v5 (cre-r.1 coexpression data)

CoexMap"5725448"


creCHLRE_02g113700v5 | Entrez gene ID : 5725448      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042927560.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  plas 1  (predict for XP_042927560.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042927560.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g113700v5

.
ath-u.5
for
AT2G03390

.
gma-u.5
for
100794023

.
gma-u.5
for
100783767

.
sly-u.5
for
101251088

.
osa-u.5
for
9269022

.
osa-u.5
for
4344777

.
zma-u.5
for
100280211

.
vvi-u.5
for
100266199

.
ppo-u.5
for
7492899

.
mtr-u.5
for
11408922

.


Ortholog ID: 9375
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sot sot cit bdi nta
Symbol AT2G03390 LOC100783767 LOC100794023 LOC101251088 LOC9269022 LOC4344777 LOC100280211 LOC103875431 LOC100266199 LOC7492899 LOC11408922 LOC123079268 LOC123062153 LOC123444488 LOC107920449 LOC121225045 LOC106346462 CHLRE_02g113700v5 LOC110433517 LOC102605078 LOC102591795 LOC102619019 LOC100832648 LOC107778109
Function* uvrB/uvrC motif-containing protein clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic uncharacterized LOC100280211 clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic-like uncharacterized protein clp protease adapter protein ClpF, chloroplastic uncharacterized LOC102605078 uncharacterized LOC102591795 clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic clp protease adapter protein ClpF, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00770 Pantothenate and CoA biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 3
gma00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00480 Glutathione metabolism 3
tae00790 Folate biosynthesis 3
tae00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi01200 Carbon metabolism 4
ghi00380 Tryptophan metabolism 4
ghi00040 Pentose and glucuronate interconversions 2
ghi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi01200 Carbon metabolism 4
ghi00380 Tryptophan metabolism 4
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
cit01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814868 100783767 100794023 101251088 9269022 4344777 100280211 103875431 100266199 7492899 11408922 123079268 123062153 123444488 107920449 121225045 106346462 5725448 110433517 102605078 102591795 102619019 100832648 107778109
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